Related Experiment Video
Updated: Dec 23, 2025

Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
Published on: May 17, 2019
Gene signature of breast cancer cell lines treated with lycopene
Nasséra Chalabi1, Laëtitia Delort, Ludovic Le Corre
1Centre Jean Perrin, Département d'Oncogénétique, 58 Rue Montalembert, BP 392, 63011 Clermont-Ferrand Cedex 01, France.
Abstract:
Among the micronutrients studied in relation between nutrition and cancer, lycopene appears to be a breast cancer preventive phytochemical candidate found in raw tomatoes and tomato-derived products. In order to investigate the responsiveness of breast cancer genes to lycopene and to better understand the molecular mechanisms underlying the effects of lycopene, we used an oligonucleotide microarray approach. Human breast cancer cell lines (MCF-7 and MDA-MB-231) and a fibrocystic breast cell line (MCF-10a) were either exposed or not exposed to 10 microM lycopene for 48 h. Microarrays comprising 202 genes were used to identify genes responsive to lycopene supplementation. Hierarchical clustering revealed a cell line-specific lycopene modulation of breast cells. Based on the observed results, lycopene seems to exert regulation on apoptosis, cell cycle and DNA repair mechanisms according to estrogen and retinoic acid receptor cell status.
Insights
Lycopene, a phytochemical in tomatoes, may prevent breast cancer by influencing genes involved in apoptosis, cell cycle, and DNA repair. This study investigated lycopene
Area of Science:
- Nutritional Science
- Molecular Biology
- Oncology
Background:
- Lycopene, a potent antioxidant phytochemical, is abundant in tomatoes and tomato products.
- Emerging evidence suggests lycopene's potential role in cancer prevention, particularly breast cancer.
- Understanding the molecular mechanisms of lycopene's action is crucial for its therapeutic application.
Purpose of the Study:
- To investigate the effects of lycopene on gene expression in human breast cancer cell lines.
- To elucidate the molecular mechanisms underlying lycopene's potential breast cancer-preventive properties.
- To identify specific genes and pathways modulated by lycopene supplementation.
Main Methods:
- Oligonucleotide microarray analysis was employed to assess gene expression changes.
- Human breast cancer cell lines (MCF-7, MDA-MB-231) and a normal breast cell line (MCF-10a) were treated with 10 microM lycopene for 48 hours.
- Gene expression profiling of 202 selected genes was performed, followed by hierarchical clustering.
Main Results:
- Lycopene treatment induced cell line-specific modulation of gene expression in breast cells.
- Significant alterations in genes related to apoptosis, cell cycle regulation, and DNA repair were observed.
- The observed gene modulations were dependent on the estrogen and retinoic acid receptor status of the cells.
Conclusions:
- Lycopene influences key cellular processes, including apoptosis, cell cycle, and DNA repair, in breast cells.
- The effects of lycopene on gene expression are cell line-specific and influenced by cellular receptor status.
- Lycopene demonstrates potential as a breast cancer-preventive agent through modulation of critical molecular pathways.
Related Concept Videos
Cancer-Critical Genes II: Tumor Suppressor Genes
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
Cancer-Critical Genes I: Proto-oncogenes
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...

