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Updated: Aug 6, 2026

Sample Preparation for Endopeptidomic Analysis in Human Cerebrospinal Fluid
Published on: December 4, 2017
Proteomic analysis of cerebrospinal fluid changes related to postmortem interval
Erin J Finehout1, Zsofia Franck, Norman Relkin
1School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, USA.
Postmortem cerebrospinal fluid (CSF) analysis revealed significant protein production changes, including 54 altered proteins and 14 increasing with time since death. These findings enhance understanding of biochemical changes after death and may identify stroke biomarkers.
Area of Science:
- Biochemistry
- Proteomics
- Neuroscience
Background:
- Understanding biochemical changes immediately after death is crucial.
- Postmortem cerebrospinal fluid (CSF) offers insights into these changes.
- Altered protein production in postmortem CSF compared to antemortem CSF is a key area of study.
Purpose of the Study:
- To investigate protein production alterations in postmortem CSF.
- To identify specific proteins changing in concentration after death.
- To correlate protein changes with the postmortem interval.
Main Methods:
- Collected paired antemortem and postmortem CSF samples from 7 patients.
- Utilized 2-dimensional gel electrophoresis for protein separation and analysis.
- Employed tandem mass spectrometry for protein identification.
Main Results:
- Identified 54 protein spots with significant concentration changes (>3.5-fold, P <0.01) in postmortem CSF.
- These proteins encompass cytoskeletal, glycolytic, and oxidative stress-related groups.
- Observed increased production in 14 protein spots correlated with the postmortem interval.
Conclusions:
- Demonstrated distinct protein production changes between antemortem and postmortem CSF.
- Highlighted proteins involved in cellular structure, metabolism, and stress response.
- Noted that some altered proteins are potential stroke biomarkers, suggesting further research avenues.
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