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Updated: Jul 5, 2026

Simultaneous Measurement of Mitochondrial Calcium and Mitochondrial Membrane Potential in Live Cells by Fluorescent Microscopy
Published on: January 24, 2017
Identification of mitochondrial DNA polymorphisms that alter mitochondrial matrix pH and intracellular calcium
An-a Kazuno1, Kae Munakata, Takeharu Nagai
1Laboratory for Molecular Dynamics of Mental Disorders, Brain Science Institute, RIKEN, Saitama, Japan.
Abstract:
Mitochondrial DNA (mtDNA) is highly polymorphic, and its variations in humans may contribute to individual differences in function as well as susceptibility to various diseases such as Parkinson disease, Alzheimer disease, bipolar disorder, and cancer. However, it is unclear whether and how mtDNA polymorphisms affect intracellular function, such as calcium signaling or pH regulation. Here we searched for mtDNA polymorphisms that have intracellular functional significance using transmitochondrial hybrid cells (cybrids) carrying ratiometric Pericam (RP), a fluorescent calcium indicator, targeted to the mitochondria and nucleus. By analyzing the entire mtDNA sequence in 35 cybrid lines, we found that two closely linked nonsynonymous polymorphisms, 8701A and 10398A, increased the basal fluorescence ratio of mitochondria-targeted RP. Mitochondrial matrix pH was lower in the cybrids with 8701A/10398A than it was in those with 8701G/10398G, suggesting that the difference observed by RP was mainly caused by alterations in mitochondrial calcium levels. Cytosolic calcium response to histamine also tended to be higher in the cybrids with 8701A/10398A. It has previously been reported that 10398A is associated with an increased risk of Parkinson disease, Alzheimer disease, bipolar disorder, and cancer, whereas 10398G associates with longevity. Our findings suggest that these mtDNA polymorphisms may play a role in the pathophysiology of these complex diseases by affecting mitochondrial matrix pH and intracellular calcium dynamics.
Insights
Mitochondrial DNA (mtDNA) variations, specifically 8701A and 10398A, impact intracellular calcium and pH. These mtDNA polymorphisms may influence susceptibility to diseases like Parkinson's and Alzheimer's.
Area of Science:
- Genetics
- Cell Biology
- Neuroscience
Background:
- Mitochondrial DNA (mtDNA) exhibits high polymorphism, potentially influencing human health and disease susceptibility.
- The precise impact of mtDNA variations on intracellular functions like calcium signaling and pH regulation remains largely unknown.
Purpose of the Study:
- To identify mtDNA polymorphisms with intracellular functional significance.
- To investigate the effects of specific mtDNA polymorphisms on mitochondrial calcium levels and matrix pH.
Main Methods:
- Utilized transmitochondrial hybrid cells (cybrids) engineered with a fluorescent calcium indicator (ratiometric Pericam).
- Analyzed the complete mtDNA sequence in 35 cybrid lines to correlate variations with functional readouts.
- Measured mitochondrial matrix pH and assessed cytosolic calcium responses to histamine.
Main Results:
- Identified two linked nonsynonymous mtDNA polymorphisms (8701A and 10398A) that elevated basal mitochondrial calcium levels.
- Observed lower mitochondrial matrix pH in cybrids carrying 8701A/10398A compared to 8701G/10398G.
- Found a trend towards higher cytosolic calcium responses to histamine in cybrids with 8701A/10398A.
Conclusions:
- Specific mtDNA polymorphisms (8701A/10398A) alter mitochondrial calcium dynamics and matrix pH.
- These functional changes provide a potential mechanism linking mtDNA variations to complex diseases like Parkinson's, Alzheimer's, and cancer.
- The findings suggest a role for mtDNA polymorphisms in disease pathophysiology through modulation of intracellular signaling pathways.
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