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Updated: Aug 6, 2026

Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
Tumour suppressor p53 down-regulates the expression of the human hepatocyte nuclear factor 4alpha (HNF4alpha) gene
Yutaka Maeda1, Wendy W Hwang-Verslues, Gang Wei
1Department of Cell Biology and Neuroscience, University of California, Riverside, CA 92521, USA.
Abstract:
The liver is exposed to a wide variety of toxic agents, many of which damage DNA and result in increased levels of the tumour suppressor protein p53. We have previously shown that p53 inhibits the transactivation function of HNF (hepatocyte nuclear factor) 4alpha1, a nuclear receptor known to be critical for early development and liver differentiation. In the present study we demonstrate that p53 also down-regulates expression of the human HNF4alpha gene via the proximal P1 promoter. Overexpression of wild-type p53 down-regulated endogenous levels of both HNF4alpha protein and mRNA in Hep3B cells. This decrease was also observed when HepG2 cells were exposed to UV irradiation or doxorubicin, both of which increased endogenous p53 protein levels. Ectopically expressed p53, but not a mutant p53 defective in DNA binding (R249S), down-regulated HNF4alpha P1 promoter activity. Chromatin immunoprecipitation also showed that endogenous p53 bound the HNF4alpha P1 promoter in vivo after doxorubicin treatment. The mechanism by which p53 down-regulates the P1 promoter appears to be multifaceted. The down-regulation was partially recovered by inhibition of HDAC activity and appears to involve the positive regulator HNF6alpha. p53 bound HNF6alpha in vivo and in vitro and prevented HNF6alpha from binding DNA in vitro. p53 also repressed stimulation of the P1 promoter by HNF6alpha in vivo. However, since the R249S p53 mutant also bound HNF6alpha, binding HNF6alpha is apparently not sufficient for the repression. Implications of the p53-mediated repression of HNF4alpha expression in response to cellular stress are discussed.
Insights
The tumor suppressor p53 reduces the expression of hepatocyte nuclear factor 4alpha (HNF4alpha) in liver cells. This p53-mediated repression of HNF4alpha is crucial for cellular stress responses.
Area of Science:
- Hepatology
- Molecular Biology
- Cellular Stress Response
Background:
- The liver encounters toxins that damage DNA, increasing tumor suppressor p53 levels.
- p53 is known to inhibit the transactivation of hepatocyte nuclear factor 4alpha1 (HNF4alpha1).
- HNF4alpha is critical for liver development and differentiation.
Purpose of the Study:
- To investigate whether p53 down-regulates the expression of the human HNF4alpha gene.
- To elucidate the mechanism by which p53 affects HNF4alpha expression.
- To understand the role of p53-mediated HNF4alpha repression in cellular stress.
Main Methods:
- Overexpression of wild-type and mutant p53 in Hep3B and HepG2 cells.
- Exposure of HepG2 cells to UV irradiation and doxorubicin.
- Analysis of HNF4alpha mRNA and protein levels.
- Reporter assays for HNF4alpha P1 promoter activity.
- Chromatin immunoprecipitation (ChIP) assays.
- In vitro and in vivo binding assays with HNF6alpha.
- Histone deacetylase (HDAC) inhibition.
Main Results:
- Overexpression of wild-type p53 decreased endogenous HNF4alpha mRNA and protein levels.
- UV irradiation and doxorubicin treatment increased p53 and decreased HNF4alpha levels in HepG2 cells.
- p53 bound the HNF4alpha P1 promoter and repressed its activity, dependent on DNA binding.
- p53 interacted with HNF6alpha, preventing HNF6alpha from binding DNA and repressing P1 promoter stimulation.
- HDAC inhibition partially recovered HNF4alpha expression, suggesting a role for histone modification.
Conclusions:
- p53 actively down-regulates HNF4alpha gene expression via the proximal P1 promoter.
- The repression mechanism involves p53 binding to the promoter and interacting with HNF6alpha.
- p53-mediated repression of HNF4alpha is a component of the cellular response to DNA damage and stress.
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