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Updated: May 10, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
A role for the deubiquitinating enzyme USP28 in control of the DNA-damage response
Dong Zhang1, Kathrin Zaugg, Tak W Mak
1Howard Hughes Medical Institute, Department of Genetics, Harvard Partners Center for Genetics and Genomics, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, MA 02115, USA.
Abstract:
The Chk2-p53-PUMA pathway is a major regulator of DNA-damage-induced apoptosis in response to double-strand breaks in vivo. Through analysis of 53BP1 complexes we have discovered a new ubiquitin protease, USP28, which regulates this pathway. Using a human cell line that faithfully recapitulated the Chk2-p53-PUMA pathway, we show that USP28 is required to stabilize Chk2 and 53BP1 in response to DNA damage. In this cell line, both USP28 and Chk2 are required for DNA-damage-induced apoptosis, and they accomplish this in part through regulation of the p53 induction of proapoptotic genes like PUMA. Our studies implicate DNA-damage-induced ubiquitination and deubiquitination as a major regulator of the DNA-damage response for Chk2, 53BP1, and a number of other proteins in the DNA-damage checkpoint pathway, including several mediators, such as Mdc1, Claspin, and TopBP1.
Insights
A newly discovered ubiquitin protease, USP28, stabilizes key proteins in the DNA damage response pathway. This protease is essential for DNA-damage-induced apoptosis, highlighting the role of ubiquitination in DNA repair.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- The Chk2-p53-PUMA pathway is critical for apoptosis following DNA double-strand breaks.
- Understanding regulators of this pathway is key to comprehending DNA damage responses.
Purpose of the Study:
- To identify novel regulators of the DNA-damage-induced apoptosis pathway.
- To elucidate the role of USP28 in DNA damage response and apoptosis.
Main Methods:
- Analysis of 53BP1 complexes to identify interacting proteins.
- Utilizing a human cell line to study the Chk2-p53-PUMA pathway.
- Investigating the stabilization of Chk2 and 53BP1 in response to DNA damage.
Main Results:
- Discovery of USP28, a ubiquitin protease that regulates the Chk2-p53-PUMA pathway.
- USP28 is required for the stabilization of Chk2 and 53BP1 after DNA damage.
- USP28 and Chk2 are essential for DNA-damage-induced apoptosis, partly via p53-mediated PUMA induction.
Conclusions:
- USP28 plays a vital role in stabilizing key proteins within the DNA damage response.
- Ubiquitination and deubiquitination are significant regulatory mechanisms in the DNA damage response pathway.
- USP28 impacts mediators like Mdc1, Claspin, and TopBP1, underscoring its broad role.
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