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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Developing and optimizing a decisional instrument using self-reported ancestry for carrier screening in a
Phillis Lakeman1, Lidewij Henneman, Pieter Dirk Bezemer
1Department of Clinical Genetics, VU University Medical Center, Amsterdam, The Netherlands.
Summary
A new tool helps couples in the Netherlands determine eligibility for cystic fibrosis and hemoglobinopathies carrier screening based on ancestry. Most users found the instrument accurate, with a preference for the questionnaire format.
Area of Science:
- Medical Genetics
- Public Health
- Genetic Screening
Background:
- Cystic fibrosis and hemoglobinopathies are genetic disorders with varying carrier frequencies based on ancestry.
- Effective carrier screening strategies are crucial for reproductive health and preventing genetic diseases.
- Developing accessible and accurate screening tools is essential for targeted genetic counseling.
Purpose of the Study:
- To develop and evaluate a decisional instrument for ancestry-based carrier couple screening for cystic fibrosis and hemoglobinopathies in the Netherlands.
- To assess the accuracy of the instrument in determining couples' eligibility for screening based on ancestral origin.
- To determine user preference between two developed instrument formats (flowchart vs. questionnaire).
Main Methods:
- Development of a flowchart (Instrument A) and a questionnaire with geographical maps (Instrument B) for self-assessment of screening eligibility.
- Comparison of instrument-based eligibility assessment with in-depth interview data on ancestral origins.
- Evaluation of user preference between Instrument A and Instrument B.
Main Results:
- High accuracy rates were observed: 88% with Instrument A and 91% with Instrument B correctly identified eligibility based on ancestry.
- Instrument B (questionnaire) was preferred by 57% of participants.
- A false negative rate of 5.5% indicates potential self-exclusion from screening among carriers, suggesting areas for improvement.
Conclusions:
- An effective decisional instrument for ancestry-based carrier screening for cystic fibrosis and hemoglobinopathies is available for use in the Netherlands.
- The instrument can be adapted for use in other countries and accommodates individuals with mixed ancestry.
- Minor modifications, such as improved geographic specificity and translated versions, could further enhance the instrument's utility.
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