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Updated: Aug 5, 2026

Prediction of HIV-1 Coreceptor Usage (Tropism) by Sequence Analysis using a Genotypic Approach
Published on: December 1, 2011
HIV-1 coreceptor preference is distinct from target cell tropism: a dual-parameter nomenclature to define viral
Maureen M Goodenow1, Ronald G Collman
1Department of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, 1600 SW Archer Rd., Gainesville, FL 32610-0275, USA. goodenow@ufl.edu
Abstract:
HIV-1 infection of cells is mediated by engagement between viral envelope glycoproteins (Env) and a receptor complex comprising CD4 and one of two chemokine receptors, CCR5 and CXCR4, expressed on the surface of target cells. Most CD4+-transformed T cell lines express only CXCR4, but primary lymphocytes and macrophages, the main cellular targets for infection in vivo, express both coreceptors. Cell- and viral strain-specific utilization of these coreceptor pathways, rather than coreceptor expression per se, regulates lymphocyte and macrophage entry and tropism. Virus use of coreceptor[s] (R5, X4, or R5 and X4) and its target cell tropism (lymphocytes, macrophages, and/or transformed T cell lines) are related but distinct characteristics of Envs. A comprehensive classification schema of HIV-1 Env phenotypes that addresses both tropism and coreceptor use is proposed. Defining Env phenotype based on both parameters is important in the development of entry inhibitors and vaccines, for understanding changes in Env that evolve over time in vivo, and for discerning differences among viral species that underlie aspects of pathogenesis and transmission. Recognizing how tropism is related to, yet differs from, coreceptor selectivity is critical for understanding the mechanisms by which these viral characteristics impact pathogenesis.
Insights
Human immunodeficiency virus type 1 (HIV-1) entry depends on viral envelope glycoproteins (Env) binding to CD4 and chemokine receptors (CCR5 or CXCR4). Understanding Env tropism and coreceptor use is key for developing treatments and vaccines.
Area of Science:
- Virology
- Immunology
- Cell Biology
Background:
- HIV-1 infection requires viral envelope glycoproteins (Env) to bind target cells via CD4 and chemokine receptors (CCR5/CXCR4).
- Primary cells like lymphocytes and macrophages express both CCR5 and CXCR4, unlike T cell lines that typically express only CXCR4.
- Coreceptor utilization and viral tropism are critical factors in HIV-1 pathogenesis and transmission.
Purpose of the Study:
- To propose a comprehensive classification schema for HIV-1 Env phenotypes.
- To differentiate between viral tropism and coreceptor selectivity.
- To highlight the importance of defining Env phenotype for therapeutic and vaccine development.
Main Methods:
- Analysis of viral envelope glycoprotein (Env) interactions with CD4 and chemokine receptors (CCR5/CXCR4).
- Evaluation of viral tropism across different cell types (T cell lines, lymphocytes, macrophages).
- Correlation of coreceptor usage (R5, X4, R5X4) with observed tropism.
Main Results:
- Viral entry and tropism are regulated by specific utilization of CCR5 and CXCR4 pathways, not solely by coreceptor expression.
- HIV-1 Env phenotypes are characterized by distinct combinations of coreceptor use and target cell tropism.
- Env tropism and coreceptor selectivity are related but distinct viral characteristics.
Conclusions:
- A proposed classification schema for HIV-1 Env phenotypes integrates both tropism and coreceptor use.
- Defining Env phenotype is crucial for developing effective entry inhibitors and vaccines.
- Understanding the interplay between tropism and coreceptor selectivity is vital for deciphering HIV-1 pathogenesis and transmission.
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