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Updated: Jul 20, 2026

Analysis of Termination of Transcription Using BrUTP-strand-specific Transcription Run-on (TRO) Approach
Published on: March 12, 2017
Human tumor suppressor p14ARF negatively regulates rRNA transcription and inhibits UBF1 transcription factor
O Ayrault1, L Andrique, D Fauvin
1Laboratoire d'Oncologie Moléculaire. EA3805, Pô le Biologie-Santé. 40, Poitiers cedex, France.
Abstract:
The nucleolar Arf protein has been shown to regulate cell cycle through both p53-dependent and -independent pathways. In addition to the well-characterized Arf-mdm2-p53 pathway, several partners of Arf have recently been described that could participate in alternative regulation process. Among those is the nucleolar protein B23/NPM, involved in the sequential maturation of rRNA. p19ARF can interact with B23/NPM in high molecular complexes and partially inhibit the cleavage of the 32S rRNA, whereas the human p14ARF protein has been shown to participate in the degradation of NPM/B23 by the proteasome. These data led to define Arf as a negative regulator of ribosomal RNA maturation. Our recent finding that the human p14ARF protein was able to specifically interact with the rRNA promoter in a p53-independent context, led us to analyse in vitro and in vivo the consequences of this interaction. Luciferase assay and pulse-chase experiments demonstrated that the rRNA transcription was strongly reduced upon p14ARF overexpression. Investigations on potential interactions between p14ARF and the transcription machinery proteins demonstrated that the upstream binding factor (UBF), required for the initiation of the transcriptional complex, was a new partner of the p14ARF protein. We next examined the phosphorylation status of UBF as UBF phosphorylation is required to recruit on the promoter factors involved in the transcriptional complex. Upon p14ARF overexpression, UBF was found hypophosphorylated, thus unable to efficiently recruit the transcription complex. Taken together, these data define a new p53-independent pathway that could regulate cell cycle through the negative control of rRNA transcription.
Insights
The nucleolar protein p14ARF regulates cell cycle by inhibiting ribosomal RNA (rRNA) transcription independently of p53. It interacts with upstream binding factor (UBF), reducing rRNA synthesis and impacting cell cycle control.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- The nucleolar protein Arf regulates cell cycle via p53-dependent and -independent pathways.
- Arf interacts with nucleolar protein B23/NPM, affecting rRNA maturation and potentially acting as a negative regulator.
- Previous studies suggest Arf's role in rRNA processing and degradation of NPM/B23.
Purpose of the Study:
- To investigate the p53-independent interaction of human p14ARF with the rRNA promoter.
- To elucidate the consequences of p14ARF binding to the rRNA promoter on rRNA transcription.
- To identify novel interaction partners of p14ARF involved in rRNA transcription regulation.
Main Methods:
- Luciferase assays to measure rRNA transcription.
- Pulse-chase experiments to assess rRNA synthesis and processing.
- Co-immunoprecipitation to identify protein interactions.
- Western blotting to analyze protein phosphorylation status.
Main Results:
- Overexpression of p14ARF significantly reduced rRNA transcription.
- p14ARF was found to interact with the upstream binding factor (UBF), a key transcription initiation factor.
- UBF was hypophosphorylated upon p14ARF overexpression, impairing its ability to recruit the transcription complex.
Conclusions:
- p14ARF negatively regulates rRNA transcription through a p53-independent mechanism.
- The interaction between p14ARF and UBF is crucial for inhibiting rRNA synthesis.
- This novel pathway highlights a new mechanism for cell cycle regulation via control of rRNA transcription.
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