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Updated: Jul 20, 2026

Assays for the Degradation of Misfolded Proteins in Cells
Published on: August 28, 2016
Insertion of an arginine residue into the transmembrane segments corrects protein misfolding
Tip W Loo1, M Claire Bartlett, David M Clarke
1Department of Medicine and Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada.
Abstract:
Deletion of Phe-508 (DeltaF508) in cystic fibrosis transmembrane conductance regulator causes cystic fibrosis because of misfolding of the protein. P-glycoprotein (P-gp) containing the equivalent mutation (DeltaY490) is also misfolded but can be rescued with drug substrates. Whether rescue is due to direct binding of drug substrate to the transmembrane (TM) segments or to indirect effects on cellular protein folding pathways is still controversial. P-gp-drug substrate interactions likely involve hydrogen bonds. If the mechanism of drug rescue involves changes to TM packing then we should be able to identify suppressor mutations in the TM segments that can mimic the drug rescue effects. We predicted that an arginine residue in the TM segments predicted to line the drug-binding pocket of P-gp (I306(TM5) or F343(TM6)) might suppress DeltaY490 P-gp protein misfolding because it has the highest propensity to form hydrogen bonds. We show that R306(TM5) or R343(TM6) increased the relative amount of mature DeltaY490 P-gp by 6-fold. Most other changes to Ile-306 or Phe-343 did not enhance maturation of DeltaY490 P-gp. The I306R mutant also promoted maturation of misprocessed mutants that had mutations in the second nucleotide-binding domain (L1260A), the cytoplasmic loops (G251V, F804A), the linker region (P709A), or in TM segments (G300V, G722A). These results show that arginine residues in the TM domains can mimic the drug rescue effects and are effective suppressor mutations for processing mutations located throughout the molecule.
Insights
Drug substrates can rescue misfolded P-glycoprotein (P-gp). Introducing arginine in P-gp’s transmembrane segments mimics this rescue, correcting misfolding and improving protein maturation.
Area of Science:
- Biochemistry
- Molecular Biology
- Genetics
Background:
- Cystic fibrosis transmembrane conductance regulator (CFTR) misfolding due to Phe-508 deletion causes disease.
- P-glycoprotein (P-gp) misfolding, similar to CFTR, can be rescued by drug substrates, but the mechanism remains unclear.
- The role of drug-substrate binding to transmembrane (TM) segments versus indirect effects on protein folding is debated.
Purpose of the Study:
- To investigate if mutations in P-gp's TM segments can mimic drug rescue effects.
- To identify specific residues and their properties that suppress P-gp misfolding.
- To determine if TM segment mutations can correct misprocessing mutations in other P-gp domains.
Main Methods:
- Computational prediction of residues prone to hydrogen bonding within P-gp's drug-binding pocket.
- Site-directed mutagenesis of Ile-306 (TM5) and Phe-343 (TM6) in P-gp.
- Assessment of mature DeltaY490 P-gp levels using Western blotting or similar techniques.
- Analysis of suppressor mutation effects on various P-gp mutants with defects in different domains.
Main Results:
- Arginine substitutions at positions 306 (TM5) or 343 (TM6) significantly increased mature DeltaY490 P-gp levels (6-fold).
- Other amino acid substitutions at these positions did not enhance DeltaY490 P-gp maturation.
- The I306R mutation also rescued misprocessing in mutants with defects in nucleotide-binding domains, cytoplasmic loops, linker regions, and TM segments.
Conclusions:
- Arginine residues in P-gp's transmembrane domains can effectively suppress protein misfolding.
- These arginine mutations mimic the effects of drug substrates, suggesting a role for TM segment interactions in rescue.
- TM domain mutations offer a potential strategy for correcting P-gp processing defects beyond the drug-binding site.
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