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Updated: Jul 20, 2026

Assessment of Global DNA Double-Strand End Resection using BrdU-DNA Labeling coupled with Cell Cycle Discrimination Imaging
Published on: April 28, 2021
Silencing of p29 affects DNA damage responses with UV irradiation
Po-Chen Chu1, Yuh-Cheng Yang, Yen-Ta Lu
1Institute of Biochemical Sciences, National Taiwan University, Taipei, Taiwan.
Abstract:
Human p29 is a newly identified nuclear protein whose function is largely undetermined. We found that p29 associated with chromatin, interacted with MCM3, and localized with proliferating cell nuclear antigen foci in the S phase. Silencing of p29 using small interfering RNA duplexes reduced DNA synthesis and increased the expression of p107, a member of the RB family, and of cyclin-dependent kinase inhibitor p21, accompanied with a decreased expression of DNA polymerase alpha. Lethal events consisting of premature chromatin condensation with a reduced Chk1 phosphorylation were observed in p29-depleted cells in response to UV irradiation. Intriguingly, the phosphorylation of ataxia telangectasia-mutated kinases at S1981 was suppressed in p29-depleted HeLa cells with UV irradiation, but not in hydroxyurea- and ionizing radiation-treated cells. Taken together, these results reveal a novel function of p29 in the regulation of DNA replication checkpoint responses.
Insights
Newly identified nuclear protein p29 regulates DNA replication and checkpoint responses. Silencing p29 disrupts DNA synthesis and impacts cell survival following UV irradiation, revealing its crucial role.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- The function of the novel nuclear protein p29 remains largely unknown.
- Understanding p29's role is crucial for comprehending DNA replication and cellular stress responses.
Purpose of the Study:
- To elucidate the function of human p29 in DNA replication and cellular responses to DNA damage.
- To investigate the interaction of p29 with key proteins involved in DNA synthesis and cell cycle regulation.
Main Methods:
- Small interfering RNA (siRNA) was used to silence p29 expression.
- Chromatin association, protein interactions (MCM3), and localization (PCNA foci) were analyzed.
- DNA synthesis, cell cycle regulators (p107, p21, DNA polymerase alpha), and checkpoint kinases (Chk1, ATM) were assessed after p29 depletion and UV irradiation.
Main Results:
- p29 associates with chromatin and interacts with MCM3, localizing to PCNA foci during S phase.
- Silencing p29 reduced DNA synthesis, increased p107 and p21 expression, and decreased DNA polymerase alpha.
- p29 depletion led to premature chromatin condensation and reduced Chk1 phosphorylation, particularly impacting ATM phosphorylation after UV irradiation.
Conclusions:
- Human p29 plays a novel role in regulating DNA replication.
- p29 is involved in DNA replication checkpoint control, particularly in response to UV-induced DNA damage.
- These findings highlight p29 as a potential target for understanding and manipulating cellular responses to genotoxic stress.
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