An off-seasonal amantadine-resistant H3N2 influenza outbreak in Japan
Reiko Saito1, Danjuan Li, Chieko Shimomura
1Department of Public Health, Graduate School of Medical and Dental Sciences, Niigata University, Japan. jasmine@med.niigata-u.ac.jp
Abstract:
An off-season community influenza outbreak with high prevalence of amantadine-resistant influenza A/H3N2 occurred during September-October 2005 in Nagasaki Prefecture, Japan, prior to standard influenza circulation. A total of 48 patients with influenza-like-illness (ILI) visited a clinic during the outbreak and 27 (69.2%) of 39 ILI patients were positive for influenza A with rapid antigen testing (Quick Vue Rapid SP Influ). Nine patients were not tested because their symptoms were compatible for influenza without examination. Nasopharyngeal swabs were obtained from 4 of 27 rapid test positive patients, and influenza H3N2 strain was isolated from one out of four. The 4 nasopharyngeal samples were positive for influenza A M2 gene in polymerase chain reaction, and sequencing results all showed identical mutation at position 31, serine to asparagine (S31N) in the gene, conferring amantadine resistance. The phylogenetic tree analysis demonstrated that the hemagglutinin (HA) gene sequences of the 4 samples formed a distinct cluster (named clade N) from recent circulating H3N2 strains, characterized by dual mutations at position 193, serine to phenylalanine (S193F), and at position 225, asparatic acid to asparagine (D225N). Our findings suggested that an off-season community influenza outbreak in Nagasaki was caused by a distinct clade in H3N2 (named clade N), which possessed characteristics of amantadine resistance.
Insights
An off-season influenza outbreak in Nagasaki was caused by a novel amantadine-resistant H3N2 strain. This distinct clade N exhibited unique mutations, highlighting potential challenges for antiviral resistance surveillance.
Area of Science:
- Virology
- Epidemiology
- Public Health
Background:
- An unusual off-season influenza A H3N2 outbreak occurred in Nagasaki Prefecture, Japan, in September-October 2005.
- This outbreak preceded the typical influenza season and was notable for a high prevalence of amantadine resistance.
Purpose of the Study:
- To investigate the characteristics of the influenza A H3N2 strain responsible for the off-season outbreak.
- To determine the genetic basis for amantadine resistance in the circulating strain.
Main Methods:
- Rapid antigen testing was used for initial diagnosis of influenza-like illness (ILI).
- Nasopharyngeal swabs from positive cases were used for virus isolation and genetic analysis.
- Polymerase chain reaction (PCR) and gene sequencing were employed to identify specific mutations, including those in the M2 gene.
- Phylogenetic analysis of the hemagglutinin (HA) gene was performed to compare the outbreak strain with contemporary H3N2 strains.
Main Results:
- Influenza A was detected in 69.2% of tested ILI patients.
- Amantadine resistance was confirmed through the detection of the S31N mutation in the M2 gene in all four analyzed samples.
- Phylogenetic analysis revealed that the H3N2 strains formed a distinct cluster (clade N), differing from currently circulating strains due to dual mutations (S193F and D225N) in the HA gene.
Conclusions:
- The off-season influenza outbreak was attributed to a distinct clade of H3N2 (clade N).
- This clade possessed amantadine resistance due to the S31N mutation.
- The findings underscore the emergence of drug-resistant influenza strains and the importance of molecular surveillance.
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