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Updated: Jul 20, 2026

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Presence of specific antibiotic (tet) resistance genes in infant faecal microbiota
Miguel Gueimonde1, Seppo Salminen, Erika Isolauri
1Functional Foods Forum, University of Turku, Turku, Finland. mgueimonde@ipla.csic.es
Abstract:
The widespread use of antibiotics for medical and veterinary purposes has led to an increase of microbial resistance. The antibiotic resistance of pathogenic bacteria has been studied extensively. However, antibiotics are not only selective for pathogens: they also affect all members of the gut microbiota. These microorganisms may constitute a reservoir of genes carrying resistance to specific antibiotics. This study was designed to characterize the gut microbiota with regard to the presence of genes encoding tetracycline resistance proteins (tet) in the gut of healthy exclusively breast-fed infants and their mothers. For this purpose we determined the prevalence of genes encoding ribosomal protection proteins (tet M, tet W, tet O, tet S, tet T and tet B) by PCR and characterized the gut microbiota by FISH in stools of infants and their mothers. The gene tet M was found in all the breast-fed infants and their mothers. tet O was found in all of the mothers' samples, whilst only 35% of the infants harboured this gene. tet W was less frequently found (85% of the mothers and 13% of the infants). None of the other genes analysed was found in any sample. Our results suggest that genes carrying antibiotic resistance are common in the environment, as even healthy breast-fed infants with no direct or indirect previous exposure to antibiotics harbour these genes.
Insights
Antibiotic resistance genes are common in the gut microbiota of healthy breast-fed infants and their mothers. Even without direct antibiotic exposure, these genes, particularly tet M, are prevalent, highlighting environmental reservoirs of resistance.
Area of Science:
- Microbiology
- Genetics
- Public Health
Background:
- Antibiotic resistance is a growing global health concern.
- While pathogen resistance is well-studied, the gut microbiota's role as a resistance reservoir is increasingly recognized.
- Antibiotics impact both pathogens and commensal gut bacteria.
Purpose of the Study:
- To investigate the prevalence of tetracycline resistance genes (tet) in the gut microbiota of healthy breast-fed infants and their mothers.
- To characterize the gut microbiota composition in relation to antibiotic resistance genes.
- To assess the potential for environmental transmission of resistance genes.
Main Methods:
- Polymerase Chain Reaction (PCR) was used to detect specific tetracycline resistance genes (tet M, tet W, tet O, tet S, tet T, tet B).
- Fluorescence In Situ Hybridization (FISH) was employed to characterize the gut microbiota composition.
- Stool samples from exclusively breast-fed infants and their mothers were analyzed.
Main Results:
- The tet M gene was detected in all infants and mothers.
- tet O was found in all mothers but only 35% of infants.
- tet W was present in 85% of mothers and 13% of infants; other tet genes were not detected.
Conclusions:
- Antibiotic resistance genes are widespread in the gut microbiota, even in healthy individuals with no history of antibiotic exposure.
- The mother-infant dyad appears to be a significant factor in the transmission of these resistance genes.
- The gut microbiota serves as a reservoir for antibiotic resistance genes, emphasizing the need for broader strategies to combat antimicrobial resistance.
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