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Updated: Jul 20, 2026

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
Alpha-actinin 4 potentiates myocyte enhancer factor-2 transcription activity by antagonizing histone deacetylase 7
Sharmistha Chakraborty1, Erin L Reineke, Minh Lam
1Department of Biochemistry, School of Medicine, Case Western Reserve University, and the Research Institute of University Hospitals of Cleveland, OH 44106, USA.
Abstract:
Histone deacetylase 7 (HDAC7) is a member of class IIa HDACs that regulate myocyte enhancer factor-2 (MEF2)-mediated transcription and participate in multiple cellular processes such as T cell apoptosis. We have identified alpha-actinin 1 and 4 as class IIa HDAC-interacting proteins. The interaction domains are mapped to C terminus of alpha-actinin 4 and amino acids 72-172 of HDAC7. A point mutation in HDAC7 that disrupts its association with MEF2A also disrupts its association with alpha-actinin 4, indicating that MEF2A and alpha-actinin 4 binding sites largely overlap. We have also isolated a novel splice variant of alpha-actinin 4 that is predominantly localized in the nucleus, a pattern distinct from the full-length alpha-actinin 4, which is primarily distributed in the cytoplasm and plasma membrane. Using small interfering RNA, chromatin immunoprecipitation, and transient transfection assays, we show that alpha-actinin 4 potentiates expression of TAF55, a putative MEF2 target gene. Loss of MEF2A interaction correlates with loss of the ability of alpha-actinin 4 to potentiate TAF55 promoter activity. Ectopic expression of alpha-actinin 4, but not the mutant defective in MEF2A association, leads to disruption of HDAC7.MEF2A association and enhancement of MEF2-mediated transcription. Taken together, we have identified a novel mechanism by which HDAC7 activity is negatively regulated and uncovered a previously unknown function of alpha-actinin 4.
Insights
Histone deacetylase 7 (HDAC7) interacts with alpha-actinin 4, a protein involved in gene transcription. Alpha-actinin 4 regulates HDAC7 activity and enhances MEF2-mediated transcription.
Area of Science:
- Molecular Biology
- Epigenetics
- Protein-protein interactions
Background:
- Histone deacetylase 7 (HDAC7) is a class IIa HDAC regulating MEF2 transcription and T cell apoptosis.
- Class IIa HDACs play critical roles in various cellular processes.
Purpose of the Study:
- To identify proteins interacting with class IIa HDACs.
- To elucidate the functional relationship between HDAC7 and its interacting proteins, specifically alpha-actinin 4.
- To uncover a novel mechanism regulating HDAC7 activity.
Main Methods:
- Co-immunoprecipitation to identify interacting proteins.
- Site-directed mutagenesis to map interaction domains.
- Small interfering RNA (siRNA) for gene silencing.
- Chromatin immunoprecipitation (ChIP) assays.
- Transient transfection assays to assess promoter activity.
Main Results:
- Alpha-actinin 1 and 4 were identified as interacting proteins of class IIa HDACs.
- Interaction domains were mapped to the C-terminus of alpha-actinin 4 and amino acids 72-172 of HDAC7.
- A novel nuclear splice variant of alpha-actinin 4 was discovered.
- Alpha-actinin 4 potentiates MEF2-mediated transcription of TAF55, a MEF2 target gene.
- The interaction between HDAC7 and MEF2A is disrupted by alpha-actinin 4 expression.
Conclusions:
- Alpha-actinin 4 negatively regulates HDAC7 activity.
- Alpha-actinin 4 possesses a previously unrecognized function in enhancing MEF2-mediated transcription.
- A novel regulatory mechanism involving alpha-actinin 4 and HDAC7 in gene expression was uncovered.
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