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Updated: Jul 19, 2026

Growing a Cystic Fibrosis-Relevant Polymicrobial Biofilm to Probe Community Phenotypes
Published on: April 19, 2024
Early microbial colonization of cystic fibrosis patients identified by neonatal screening, with emphasis on
Helena A P H M Souza1, Keite S Nogueira, Adriana P Matos
1Universidade Federal do Paraná (UFPR), Curitiba, PR. helenahms@onda.com.br
Insights
Staphylococcus aureus was the most common bacteria found in cystic fibrosis patients, with some strains showing resistance to oxacillin, possibly acquired in hospitals. Pseudomonas aeruginosa was less frequent in this Brazilian cohort.
Area of Science:
- Medical microbiology
- Infectious diseases
- Cystic Fibrosis research
Background:
- Neonatal screening identifies cystic fibrosis (CF) patients early.
- Bacterial colonization is a significant concern in CF management.
- Understanding pathogen prevalence and resistance is crucial for treatment.
Purpose of the Study:
- To prospectively assess bacterial colonization in CF patients identified via neonatal screening.
- To determine antimicrobial susceptibility of isolated bacteria.
- To perform molecular typing of Staphylococcus aureus strains.
Main Methods:
- Prospective study of 25 CF patients.
- Oropharyngeal swabs collected and cultured.
- Phenotypic identification and antimicrobial susceptibility testing.
- Molecular typing of S. aureus using pulsed-field gel electrophoresis.
Main Results:
- Staphylococcus aureus was the most frequent isolate (76% of patients).
- Pseudomonas aeruginosa (36%) and Haemophilus spp. (76%) were also identified.
- 18 oxacillin-resistant S. aureus isolates (24.6%) shared identical profiles, suggesting hospital acquisition.
- Oxacillin-susceptible S. aureus isolates showed diverse profiles, indicating community origins.
Conclusions:
- S. aureus demonstrated higher prevalence and earlier isolation than other pathogens in this CF cohort.
- Multi-sensitive S. aureus strains were diverse, suggesting limited transmissibility among community strains.
- Oxacillin-resistant S. aureus isolates likely represent hospital-acquired infections.
- Pseudomonas aeruginosa was less prevalent in this specific patient group.
Objectives:
To assess bacterial colonization prospectively in patients with cystic fibrosis identified by neonatal screening. To assess susceptibility to antimicrobials and to perform the molecular typing of Staphylococcus aureus strains isolated from the oropharynx of patients during the study.
Methods:
Twenty-five cystic fibrosis patients receiving regular treatment at the Cystic Fibrosis Outpatient Clinic of Hospital de Clínicas of Universidade Federal do Paraná, Brazil, were included in the study. All patients were identified by trypsin-like immunoreactivity and their diagnosis was confirmed by two or more sweat tests. Oropharyngeal swabs were collected and cultured according to routine methods; bacterial colonies were phenotypically identified and their susceptibility to antimicrobials was tested. S. aureus isolates were submitted to molecular typing using pulsed-field gel electrophoresis.
Results:
Out of 234 oropharyngeal swabs, S. aureus was the most frequently isolated strain (76% of patients, 42% of swabs), followed by Pseudomonas aeruginosa (36% of patients, 16% of swabs) and Haemophilus spp. (76% of patients; 19% of swabs). Seventy-three isolates were obtained from 19 patients colonized with S. aureus, of which 18 were oxacillin-resistant (24.6%), isolated from two patients, with the same electrophoretic profiles as that of the Brazilian clone. The remaining oxacillin-sensitive isolates were distributed into 18 electrophoretic profiles.
Conclusion:
There was higher prevalence of S. aureus, with earlier isolation than other pathogens. Multi-sensitive isolates were distributed into different clones, characterizing non-transmissibility among community-acquired strains. The isolated oxacillin-resistant S. aureus showed identical electrophoretic profiles, probably acquired in hospital. P. aeruginosa was not so frequent in the studied population.
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