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Updated: Jul 19, 2026

Monitoring Stub1-Mediated Pexophagy
Published on: May 12, 2023
Pexophagy: autophagic degradation of peroxisomes
Yasuyoshi Sakai1, Masahide Oku, Ida J van der Klei
1Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Kyoto 606-8502, Japan. ysakai@kais.kyoto-u.ac.jp
Abstract:
The abundance of peroxisomes within a cell can rapidly decrease by selective autophagic degradation (also designated pexophagy). Studies in yeast species have shown that at least two modes of peroxisome degradation are employed, namely macropexophagy and micropexophagy. During macropexophagy, peroxisomes are individually sequestered by membranes, thus forming a pexophagosome. This structure fuses with the vacuolar membrane, resulting in exposure of the incorporated peroxisome to vacuolar hydrolases. During micropexophagy, a cluster of peroxisomes is enclosed by vacuolar membrane protrusions and/or segmented vacuoles as well as a newly formed membrane structure, the micropexophagy-specific membrane apparatus (MIPA), which mediates the enclosement of the vacuolar membrane. Subsequently, the engulfed peroxisome cluster is degraded. This review discusses the current state of knowledge of pexophagy with emphasis on studies on methylotrophic yeast species.
Insights
Cellular peroxisomes decrease via selective autophagy (pexophagy). This review details macropexophagy and micropexophagy, two distinct peroxisome degradation pathways identified in yeast species.
Area of Science:
- Cell Biology
- Autophagy Research
- Yeast Genetics
Background:
- Peroxisomes are vital organelles whose abundance is tightly regulated.
- Selective autophagic degradation, termed pexophagy, is a key mechanism for reducing peroxisome numbers.
- Two distinct pexophagy pathways, macropexophagy and micropexophagy, have been identified in yeast.
Purpose of the Study:
- To review the current understanding of pexophagy.
- To highlight the mechanisms of macropexophagy and micropexophagy.
- To focus on studies involving methylotrophic yeast species.
Main Methods:
- Literature review of pexophagy research.
- Comparative analysis of macropexophagy and micropexophagy pathways.
- Emphasis on studies utilizing methylotrophic yeast models.
Main Results:
- Macropexophagy involves individual peroxisome engulfment into a pexophagosome, followed by vacuolar fusion and degradation.
- Micropexophagy entails the enclosure of peroxisome clusters by a novel membrane structure, the MIPA, and subsequent degradation.
- Both pathways demonstrate the cell's capacity for precise peroxisome turnover.
Conclusions:
- Pexophagy is a crucial cellular process for peroxisome homeostasis.
- Distinct mechanisms of macro- and micropexophagy highlight the complexity of autophagic pathways.
- Methylotrophic yeasts serve as important models for dissecting pexophagy.
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