Related Experiment Video
Updated: Jul 19, 2026

13:47
Enhanced Reduced Representation Bisulfite Sequencing for Assessment of DNA Methylation at Base Pair Resolution
Published on: February 24, 2015
DNA hypomethylation and human diseases.
Ann S Wilson1, Barbara E Power, Peter L Molloy
1Preventative Health National Research Flagship, North Ryde, NSW, Australia.
Biochimica Et Biophysica Acta
|October 19, 2006
Summary
Cancer involves DNA hypomethylation, particularly in repeat sequences, leading to instability and mutations. This review explores mechanisms and biomarker potential for early cancer detection and prognosis.
Area of Science:
- Epigenetics
- Cancer Biology
- Genomics
Background:
- DNA methylation patterns are crucial in cancer and other diseases like atherosclerosis and autoimmune disorders.
- Cancer genomes exhibit gene hypermethylation alongside global DNA hypomethylation, affecting 5-methylcytosine levels.
- Hypomethylation predominantly impacts intergenic, intronic, and repetitive DNA regions, potentially causing chromosomal instability.
Purpose of the Study:
- To review current understanding of cancer-associated DNA hypomethylation patterns.
- To explore how chromatin biology advances elucidate mechanisms of repeat sequence demethylation.
- To examine the contribution of global and gene-specific hypomethylation to cancer and disease initiation/progression.
Main Methods:
- Review of existing literature on DNA methylation in cancer and related diseases.
- Analysis of recent findings in chromatin biology relevant to demethylation mechanisms.
- Examination of studies on repeat sequences and transposable elements in genomic instability.
Main Results:
- Cancer-associated hypomethylation affects specific genes and global genomic regions, including repetitive elements.
- Hypomethylation of repeat sequences and transposable elements is linked to chromosomal instability and increased mutations.
- Site-specific gene hypomethylation and global repeat demethylation contribute to cancer initiation and progression.
Conclusions:
- Understanding DNA hypomethylation patterns is key to deciphering cancer development.
- Hypomethylation of repeat sequences and specific genes offers potential as biomarkers for early tumor detection and prognosis.
- Further research into chromatin biology can illuminate the mechanisms driving these epigenetic changes.
Related Concept Videos
Epigenetic Regulation
Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
X-chromosome...
Epigenetic Regulation
Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
Genomic Imprinting and Inheritance
Diploid organisms inherit genetic material through chromosomes from both parents. Copies of the same gene are known as alleles. In most cases, both alleles are simultaneously expressed and allow various cellular processes to function optimally. If one of the alleles is missing or mutated, the expression of the other allele can compensate; however, this is not true for all genes.
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Spreading of Chromatin Modifications
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer is an enzyme that can...
Writers
The writer is an enzyme that can...

