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Sequence resources at the Candida Genome Database.

Martha B Arnaud1, Maria C Costanzo, Marek S Skrzypek

  • 1Department of Genetics, Stanford University Medical School, Stanford, CA 94305-5120, USA. arnaudm@genome.stanford.edu

Nucleic Acids Research
|November 9, 2006
PubMed
Summary
This summary is machine-generated.

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The Candida Genome Database (CGD) now provides the latest Candida albicans genome assembly (Assembly 20) alongside previous versions. This resource supports researchers studying this opportunistic pathogen by offering curated genomic data and analysis tools.

Area of Science:

  • Mycology
  • Genomics
  • Bioinformatics

Background:

  • Candida albicans is an opportunistic fungal pathogen with significant clinical relevance.
  • Advancements in C. albicans genomics necessitate updated and accessible data resources.
  • Maintaining consistency across multiple genome assemblies and gene nomenclatures is a challenge for researchers.

Purpose of the Study:

  • To update the Candida Genome Database (CGD) with the new C. albicans genome assembly (Assembly 20).
  • To provide researchers with access to curated genomic information and community resources for C. albicans.
  • To offer tools for sequence retrieval, analysis, and comparison within the CGD.

Main Methods:

  • Integration of the new C. albicans genome assembly (Assembly 20) into the CGD.

Related Experiment Videos

  • Curating and maintaining genomic data from current and previous assemblies.
  • Developing and providing bioinformatics tools for data analysis and retrieval.

    • Main Results:

    • CGD now hosts the latest C. albicans genome assembly (Assembly 20).
    • The database preserves access to historical genome assemblies and associated data.
    • Enhanced tools for sequence analysis and comparison are available through CGD.

    Conclusions:

    • CGD is a vital resource for C. albicans research, supporting the transition to new genome assemblies.
    • The database facilitates ongoing studies in the molecular biology of C. albicans.
    • Continued curation and updates ensure CGD remains a comprehensive platform for fungal genomics.