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The UCSC genome browser database: update 2007.

R M Kuhn1, D Karolchik, A S Zweig

  • 1Center for Biomolecular Science and Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA. kuhn@soe.ucsc.edu

Nucleic Acids Research
|December 5, 2006
PubMed
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This summary is machine-generated.

The UCSC Genome Browser Database offers comprehensive genomic data for vertebrates and invertebrates, featuring advanced visualization and querying tools for biological research.

Area of Science:

  • Genomics
  • Bioinformatics
  • Comparative Genomics

Background:

  • The University of California, Santa Cruz (UCSC) Genome Browser Database houses sequence and annotation data for numerous species.
  • It provides a comprehensive resource for exploring genomic information at various scales.

Purpose of the Study:

  • To present the capabilities and recent updates of the UCSC Genome Browser Database.
  • To highlight its utility for researchers in genomics and related fields.

Main Methods:

  • The database integrates assembly data, gene predictions, mRNA and EST alignments, and comparative genomics data.
  • Web tools offer powerful visualization and querying for interactive data mining.

Main Results:

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  • As of September 2006, data for 13 vertebrate and 19 invertebrate species were available.
  • Recent updates include 22 new assemblies, enhanced human variation annotation, VisiGene, phyloGif, and a redesigned Custom Track feature.

    • Conclusions:

    • The UCSC Genome Browser provides a robust platform for accessing and analyzing diverse genomic datasets.
    • Its continuous development with new features enhances its value for biological research and discovery.