Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

SLIMarray: lightweight software for microarray facility management.

Bruz Marzolf1, Pamela Troisch

  • 1Institute for Systems Biology, 1441 N 34th Street, Seattle, Washington, USA. bmarzolf@systemsbiology.org

Source Code for Biology and Medicine
|December 7, 2006
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

APMAT analysis reveals the association between CD8 T cell receptors, cognate antigen, and T cell phenotype and persistence.

Nature communications·2025
Same author

APMAT analysis reveals the association between CD8 T cell receptors, cognate antigen, and T cell phenotype and persistence.

bioRxiv : the preprint server for biology·2025
Same author

Multi-Omic characterization of the effects of Ocrelizumab in patients with relapsing-remitting multiple sclerosis.

Journal of the neurological sciences·2024
Same author

Multiple early factors anticipate post-acute COVID-19 sequelae.

Cell·2022
Same author

Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19.

Cell·2020
Same author

Multiomic Immunophenotyping of COVID-19 Patients Reveals Early Infection Trajectories.

bioRxiv : the preprint server for biology·2020
Same journal

2DKD: a toolkit for content-based local image search.

Source code for biology and medicine·2020
Same journal

Computing and graphing probability values of pearson distributions: a SAS/IML macro.

Source code for biology and medicine·2020
Same journal

iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach.

Source code for biology and medicine·2019
Same journal

Social support for collaboration and group awareness in life science research teams.

Source code for biology and medicine·2019
Same journal

MZPAQ: a FASTQ data compression tool.

Source code for biology and medicine·2019
Same journal

IPCAPS: an R package for iterative pruning to capture population structure.

Source code for biology and medicine·2019
See all related articles

SLIMarray is a new open-source software designed to manage microarray core facility operations. This system helps track inventories, sample processing, and charges, improving organization and reducing errors in biological research.

Area of Science:

  • Bioinformatics
  • Laboratory Management Systems
  • Genomics

Background:

  • Microarray core facilities are essential in biological research organizations.
  • Accurate tracking of logistical aspects like inventory and sample processing is crucial.
  • Existing systems are often separate, leading to potential inefficiencies and errors.

Purpose of the Study:

  • To introduce an integrated management system for microarray core facilities.
  • To provide a free and open-source software solution for laboratory logistics.
  • To enhance organization, automation, and error reduction in facility operations.

Main Methods:

  • Development of SLIMarray (System for Lab Information Management of Microarrays).
  • Implementation as a modular database web application.

Related Experiment Videos

  • Inclusion of SLIMarray Lite for ease of installation and use.

    • Main Results:

    • SLIMarray effectively manages microarray inventories, sample processing, and usage charges.
    • The software is modular, allowing for flexible configuration and further development.
    • SLIMarray Lite offers a user-friendly option for simpler implementation.

    Conclusions:

    • SLIMarray fulfills the need for open-source software in microarray core facility management.
    • The system streamlines operations, improving efficiency and data accuracy.
    • Provides a flexible and adaptable solution for diverse research needs.