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EMBL Nucleotide Sequence Database in 2006.

Tamara Kulikova1, Ruth Akhtar, Philippe Aldebert

  • 1EMBL Outstation-European Bioinformatics Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD, UK. kulikova@ebi.ac.uk

Nucleic Acids Research
|December 7, 2006
PubMed
Summary

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This summary is machine-generated.

The EMBL Nucleotide Sequence Database provides a vast, free collection of nucleotide sequences and annotations. It collaborates with DDBJ and GenBank, ensuring synchronized data and offering multiple access and submission methods.

Area of Science:

  • Bioinformatics
  • Genomics
  • Molecular Biology

Background:

  • The EMBL Nucleotide Sequence Database is a key resource for biological data.
  • It is maintained by the EMBL European Bioinformatics Institute in collaboration with DDBJ and GenBank.
  • Daily data exchange ensures optimal synchrony between these major sequence databases.

Purpose of the Study:

  • To describe the resources and services offered by the EMBL Nucleotide Sequence Database.
  • To highlight data submission methods and access options.
  • To outline recent developments and ongoing data growth.

Main Methods:

  • Utilizes Webin for individual sequence submissions, including Third Party Annotation and bulk data.
  • Employs automated procedures for large-scale sequencing projects and patent office data.

Related Experiment Videos

  • Provides access via SRS, FTP, and other methods, with extensive cross-referencing.

    • Main Results:

    • The database offers a large, freely accessible collection of nucleotide sequences and annotations.
    • Data volume continues to grow exponentially.
    • Recent updates include file format changes, EMBLCDS dataset development, and XML format enhancements.

    Conclusions:

    • The EMBL Nucleotide Sequence Database remains a vital and expanding resource for the scientific community.
    • Collaborative efforts ensure data integrity and accessibility.
    • Continuous development enhances data usability and integration with other resources.