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High-throughput Screening for Chemical Modulators of Post-transcriptionally Regulated Genes
Published on: March 3, 2015
Chemopreventive agents alters global gene expression pattern: predicting their mode of action and targets
1New York University School of Medicine, Department of Environmental Medicine, Tuxedo, NY 10987, USA. bhagavathi@env.med.nyu.edu
Abstract:
Chemoprevention has the potential to be a major component of colon, breast, prostate and lung cancer control. Epidemiological, experimental, and clinical studies provide evidence that antioxidants, anti-inflammatory agents, n-3 polyunsaturated fatty acids and several other phytochemicals possess unique modes of action against cancer growth. However, the mode of action of several of these agents at the gene transcription level is not completely understood. Completion of the human genome sequence and the advent of DNA microarrays using cDNAs enhanced the detection and identification of hundreds of differentially expressed genes in response to anticancer drugs or chemopreventive agents. In this review, we are presenting an extensive analysis of the key findings from studies using potential chemopreventive agents on global gene expression patterns, which lead to the identification of cancer drug targets. The summary of the study reports discussed in this review explains the extent of gene alterations mediated by more than 20 compounds including antioxidants, fatty acids, NSAIDs, phytochemicals, retinoids, selenium, vitamins, aromatase inhibitor, lovastatin, oltipraz, salvicine, and zinc. The findings from these studies further reveal the utility of DNA microarray in characterizing and quantifying the differentially expressed genes that are possibly reprogrammed by the above agents against colon, breast, prostate, lung, liver, pancreatic and other cancer types. Phenolic antioxidant resveratrol found in berries and grapes inhibits the formation of prostate tumors by acting on the regulatory genes such as p53 while activating a cascade of genes involved in cell cycle and apoptosis including p300, Apaf-1, cdk inhibitor p21, p57 (KIP2), p53 induced Pig 7, Pig 8, Pig 10, cyclin D, DNA fragmentation factor 45. The group of genes significantly altered by selenium includes cyclin D1, cdk5, cdk4, cdk2, cdc25A and GADD 153. Vitamine D shows impact on p21(Waf1/Cip1) p27 cyclin B and cyclin A1. Genomic expression profile with vitamin D indicated differential expression of gene targets such as c-JUN, JUNB, JUND, FREAC-1/FoxF1, ZNF-44/KOX7, plectin, filamin, and keratin-13, involved in antiproliferative, differentiation pathways. The agent UBEIL has a remarkable effect on cyclin D1. Curcumin mediated NrF2 pathway significantly altered p21(Waf1/Cip1) levels. Aromatase inhibitors affected the expression of cyclin D1. Interestingly, few dietary compounds listed in this review also have effect on APC, cdk inhibitors p21(Waf1/Cip1) and p27. Tea polyphenol EGCG has a significant effect on TGF-beta expression, while several other earlier studies have shown its effect on cell cycle regulatory proteins. This review article reveals potential chemoprevention drug targets, which are mainly centered on cell cycle regulatory pathway genes in cancer.
Insights
Chemoprevention agents like antioxidants and phytochemicals can control various cancers by altering gene expression. DNA microarrays help identify these gene targets, primarily in cell cycle regulation, for new cancer drug development.
Area of Science:
- * Molecular Biology
- * Genomics
- * Cancer Research
Background:
- * Chemoprevention offers a promising strategy for controlling major cancers, including those of the colon, breast, prostate, and lung.
- * While various agents like antioxidants, anti-inflammatory drugs, and phytochemicals show anticancer effects, their precise mechanisms at the gene transcription level require further elucidation.
- * The advent of DNA microarrays has revolutionized the study of gene expression, enabling the identification of hundreds of differentially expressed genes in response to therapeutic agents.
Purpose of the Study:
- * To conduct an extensive analysis of key findings from studies investigating potential chemopreventive agents and their impact on global gene expression patterns.
- * To identify novel cancer drug targets by examining how various compounds modulate gene expression.
- * To review the utility of DNA microarrays in characterizing and quantifying gene alterations induced by chemopreventive agents across diverse cancer types.
Main Methods:
- * Comprehensive review of existing literature on chemopreventive agents and their effects on gene expression.
- * Analysis of studies utilizing DNA microarrays to profile global gene expression changes.
- * Focus on over 20 compounds, including antioxidants, fatty acids, NSAIDs, phytochemicals, retinoids, selenium, vitamins, and specific agents like oltipraz and resveratrol.
Main Results:
- * Demonstrated that numerous chemopreventive agents significantly alter gene expression patterns, offering insights into their anticancer mechanisms.
- * Identified key regulatory genes and pathways, particularly those involved in cell cycle control and apoptosis, as common targets.
- * Highlighted the effectiveness of DNA microarrays in quantifying gene alterations induced by agents such as resveratrol, selenium, vitamin D, curcumin, and EGCG.
Conclusions:
- * Chemopreventive agents reprogram gene expression, primarily targeting cell cycle regulatory pathways, to exert their anticancer effects.
- * The identified gene targets represent potential therapeutic targets for novel cancer drug development.
- * DNA microarray technology is a valuable tool for discovering and validating these chemoprevention-mediated gene targets across various cancer types.
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