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Updated: Jun 28, 2026

RNA Secondary Structure Prediction Using High-throughput SHAPE
Published on: May 31, 2013
Similarity of RNA secondary structures
Chun Li1, Ai-Hua Wang, Lili Xing
1Department of Mathematics, Bohai University, Jinzhou 121000, People's Republic of China. lchlmb@yahoo.com.cn
Abstract:
In this article, we propose a relatively similar measure to compare RNA secondary structures. We first transform an RNA secondary structure into a special sequence representation. Then, on the basis of symbolic sequence complexity, we obtain the relative distance of RNA secondary structures. The examination of similarities/dissimilarities of a set of RNA secondary structures at the 3'-terminus of different viruses illustrates the utility of the approach.
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