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Analysis of the c-KIT Ligand Promoter Using Chromatin Immunoprecipitation
Published on: June 27, 2017
A kinase subunit of the human mediator complex, CDK8, positively regulates transcriptional activation
Tadashi Furumoto1, Aki Tanaka, Mitsuhiro Ito
1Graduate School of Frontier Biosciences, Osaka Universuty, Suita, Osaka 565-0871, Japan.
Abstract:
The human thyroid hormone receptor-associated proteins (TRAP)/Mediator and related complexes mediate transcription through regulatory factors. To further understand the structural and functional diversity of these complexes we established three HeLa cell lines each expressing one of three epitope-tagged human TRAP/Mediator subunits, MED6, MED7, and CDK8 and isolated the complexes in which these subunits were contained by affinity and HPLC-gel filtration chromatography. The largest complexes from each cell line had a molecular mass of 1.5 MDa and possessed almost identical subunit compositions; we designated these complexes TRAP/Mediator-like complex 1 (TMLC1). Two potential subcomplexes were additionally observed: a 1-MDa complex from the CDK8-cell line (TMLC2) and a 600-kDa complex from the MED6-cell line (TMLC3). All three complexes regulated transcription in vitro; TMLC1 and TMLC3 augmented transcriptional activation, whereas TMLC2 repressed it. TMLC1 and TMLC2 phosphorylated RNA polymerase II (Pol II), but TMLC3 did not. Furthermore, TMLC1 predominantly interacted with the general transcription factors TFIIE, TFIIF, and TFIIH, which function during transcription initiation and the transition to elongation. In a final experiment, knockdown of CDK8 using RNA interference prevented transcriptional activation by Gal4-VP16 in a luciferase-assay. This, together with the effect of TMLC1 on transcription in vitro, suggests that CDK8 play positive roles in transcriptional activation.
Insights
Researchers investigated the structure and function of human TRAP/Mediator complexes. They found distinct complexes, including CDK8-containing ones, that regulate transcription and RNA polymerase II phosphorylation, with CDK8 playing a positive role in activation.
Area of Science:
- Molecular Biology
- Gene Regulation
- Protein Complexes
Background:
- The Mediator complex, including TRAP/Mediator subunits, is crucial for regulating gene transcription.
- Understanding the structural and functional diversity of Mediator subcomplexes is essential for deciphering gene expression control.
Purpose of the Study:
- To characterize the structural and functional properties of human TRAP/Mediator complexes containing MED6, MED7, and CDK8.
- To investigate the roles of these complexes in transcriptional regulation and RNA polymerase II modification.
Main Methods:
- Established HeLa cell lines expressing epitope-tagged TRAP/Mediator subunits (MED6, MED7, CDK8).
- Isolated complexes using affinity and HPLC-gel filtration chromatography.
- Assessed transcriptional activity in vitro and performed RNA interference knockdown of CDK8.
Main Results:
- Identified three distinct TRAP/Mediator-like complexes (TMLC1, TMLC2, TMLC3) with varying molecular masses and subunit compositions.
- TMLC1 and TMLC3 augmented transcription, while TMLC2 repressed it; TMLC1 and TMLC2 phosphorylated RNA polymerase II.
- Knockdown of CDK8 inhibited transcriptional activation, suggesting a positive role in the process.
Conclusions:
- Human TRAP/Mediator complexes exhibit structural and functional heterogeneity.
- CDK8 is implicated in positive regulation of transcriptional activation, potentially through interactions with general transcription factors and RNA polymerase II phosphorylation.
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