Related Experiment Video
Updated: Jul 17, 2026

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Polymorphisms of catechol-O-methyltransferase in men with renal cell cancer
Yuichiro Tanaka1, Hiroshi Hirata, Zhong Chen
1Department of Urology, Veterans Affairs Medical Center and University of California at San Francisco, 4150 Clement Street, San Francisco, CA 94121, USA.
Abstract:
The estrogen metabolite, 4-hydroxy-estrogen, has been shown to play a role in malignant transformation of male kidneys. To counteract the effects of this catechol-estrogen, the catechol-O-methyltransferase (COMT) enzyme is capable of neutralizing the genotoxic effects of this compound. A polymorphic variant of COMT has been shown to have a reduced enzyme activity, and thus, we hypothesize that single nucleotide polymorphisms of the COMT gene can be a risk factor for renal cell cancer (RCC). To determine this hypothesis, a study of a Japanese male population was used and the genetic distributions of COMT polymorphisms at codons 62 (C-->T), 72 (G-->T), and 158 (G-->A) were analyzed in 157 normal healthy subjects and 123 sporadic RCC (clear cell type) samples by using a sequence-specific PCR technique. These experiments show that the variant genotype (P = 0.025) and allele (P = 0.011) at codon 62 is a risk factor for RCC. The odds ratio and 95% confidence interval for cancer were 3.16 and 1.29 to 7.73, respectively, for the T/T genotype as compared with wild-type. No associations for renal cancer were found at either codons 72 or 158 in this Japanese male population. However, codons 62 and 158 were observed to be in linkage disequilibrium, and haplotype analysis shows the combined forms of T-A, T-G, and C-A to be associated with RCC as compared with C-G (P < 0.001). When evaluating the risk of COMT polymorphisms with grade of cancer, no associations were observed for any of the genotypes. This study is the first to report COMT polymorphism to be associated with RCC. These results are important in understanding the role of COMT polymorphisms in the pathogenesis of RCC.
Insights
Genetic variations in the catechol-O-methyltransferase (COMT) gene, specifically at codon 62, increase the risk of developing renal cell cancer (RCC) in Japanese men. This finding highlights COMT polymorphisms as a potential factor in kidney cancer development.
Area of Science:
- Genetics
- Oncology
- Biochemistry
Background:
- Estrogen metabolites like 4-hydroxy-estrogen contribute to kidney cancer.
- Catechol-O-methyltransferase (COMT) neutralizes genotoxic estrogen metabolites.
- COMT gene variants with reduced activity may increase cancer risk.
Purpose of the Study:
- To investigate the association between COMT gene polymorphisms and renal cell cancer (RCC) risk.
- To analyze COMT gene variants at codons 62, 72, and 158 in a Japanese male population.
Main Methods:
- Sequence-specific PCR technique used for genetic analysis.
- Analyzed 157 healthy Japanese males and 123 sporadic RCC patients.
- Examined COMT polymorphisms at codons 62, 72, and 158.
Main Results:
- COMT codon 62 variant genotype and allele are significant risk factors for RCC (P=0.025, P=0.011).
- The T/T genotype at codon 62 showed an odds ratio of 3.16 for cancer.
- No association found for codons 72 or 158, but linkage disequilibrium observed between 62 and 158.
Conclusions:
- COMT codon 62 polymorphism is a risk factor for RCC in Japanese males.
- Haplotype analysis revealed associations between combined COMT variants (T-A, T-G, C-A) and RCC.
- This study is the first to link COMT gene polymorphisms to RCC pathogenesis.
More Related Videos
10:33Efficient Purification and LC-MS/MS-based Assay Development for Ten-Eleven Translocation-2 5-Methylcytosine Dioxygenase
Published on: October 15, 2018
06:21Multi-Gene Single Nucleotide Polymorphism Detection in Gastric Cancer Based on Ion Semiconductor Sequencing Platform
Published on: May 10, 2024
Related Concept Videos
Pharmacogenetics of Drug Targets: β₂-Adrenergic Receptors, Apo E, Thymidylate Synthase
Pharmacogenetics of Phase II Enzymes: N-acetyltransferase, Thiopurine S-methyltransferase, UDP-glucuronosyltransferase
Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu
Pharmacogenetics of Phase I Enzymes: Cytochrome P450 Isozymes
Pharmacogenetics of Drug Metabolism: Overview