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Updated: Jul 17, 2026

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Prevalence of aminoglycoside-modifying enzymes genes among isolates of Enterococcus faecalis and Enterococcus faecium
Mohammad Mehdi Feizabadi1, Parviz Maleknejad, Ahmad Asgharzadeh
1Department of Microbiology, Faculty of Medicine, Tehran University of Medical Science, Tehran, Iran. mfeizabadi@tums.ac.ir
Abstract:
Disks containing 120 microg of gentamicin were used to detect high-level gentamicin-resistant phenotype (HLGR) among isolates of Enterococcus faecalis (n = 79) and E. faecium (n = 35). These isolates were collected from three hospitals in Tehran during 2002-2004. The macrobroth dilution assay was then used to determine the minimum inhibitory concentration (MIC) of gentamicin. The susceptibility of isolates against amikacin, netilmicin, tobramycin, and kanamycin were also determined by Kirby-Bauer method. All isolates were subjected to polymerase chain reaction (PCR) assays targeting aminoglycoside modifying enzyme (AMEs) genes including aac(6 ')-aph(2 "), aph(2 ")-Ib, aph(2 ")-Ic, aph(2 ")-Ia, aph(2 ")-Id, aph(3 ')-IIIa, and ant(4 ')-Ia. Fifty-nine isolates (52%) showed HLGR phenotype. All isolates with HLGR phenotype and those showing 64 < MIC < 500 microg/ml contained aac(6 ')-aph(2 "). The aph(3 ')-IIIa was found in 61% of the isolates with HLGR phenotypes and in 65% of isolates with MIC < 500. Coexistence of aac(6 ')-aph(2 ") and aph(3 ')-IIIa gene among HLGR isolates of E. faecalis and E. faecium were 60% and 65%, respectively. The gene aph(2 ")-Ic was amplified in two isolates of E. faecium. The results of PCR for aph(2 ")-Id, ant(4 ')-Ia and aph(2 ")-Ib genes were negative. The aac(6 ')-aph(2 ") was the most frequent gene encoding resistance to gentamicin and other aminoglycosides followed by aph(3 ')-IIIa. Isolates lacking these genes were susceptible to all aminoglyocosides tested in this study.
Insights
High-level gentamicin resistance (HLGR) in Enterococcus is often linked to the aac(6')-aph(2") gene. This study found aac(6')-aph(2") and aph(3')-IIIa genes were common in resistant Enterococcus faecalis and E. faecium isolates.
Area of Science:
- Microbiology
- Molecular Biology
- Antimicrobial Resistance
Background:
- High-level gentamicin resistance (HLGR) in Enterococcus species is a significant clinical concern, impacting treatment options.
- Enterococcus faecalis and Enterococcus faecium are common causes of hospital-acquired infections.
Purpose of the Study:
- To investigate the prevalence of HLGR phenotype in Enterococcus isolates from Tehran hospitals.
- To identify the aminoglycoside modifying enzyme (AME) genes responsible for gentamicin resistance in these isolates.
Main Methods:
- Disk diffusion and macrobroth dilution assays were used to determine gentamicin resistance and minimum inhibitory concentrations (MICs).
- Polymerase chain reaction (PCR) was employed to detect specific AME genes, including aac(6 rifluoromethyl)-aph(2 rifluoromethyl), aph(3 rifluoromethyl)-IIIa, and others.
- Susceptibility to other aminoglycosides (amikacin, netilmicin, tobramycin, kanamycin) was also assessed.
Main Results:
- 52% of Enterococcus isolates exhibited the HLGR phenotype.
- The aac(6 rifluoromethyl)-aph(2 rifluoromethyl) gene was present in all HLGR isolates and those with high gentamicin MICs.
- The aph(3 rifluoromethyl)-IIIa gene was frequently found in HLGR isolates and those with MICs < 500 µg/mL.
- Co-occurrence of aac(6 rifluoromethyl)-aph(2 rifluoromethyl) and aph(3 rifluoromethyl)-IIIa was observed in a majority of HLGR isolates.
Conclusions:
- The aac(6 rifluoromethyl)-aph(2 rifluoromethyl) gene is the predominant mechanism for high-level gentamicin resistance in Enterococcus faecalis and E. faecium in this region.
- The aph(3 rifluoromethyl)-IIIa gene also contributes significantly to aminoglycoside resistance.
- Molecular detection of these AME genes is crucial for understanding and managing gentamicin resistance in Enterococcus infections.
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