Related Experiment Video

Updated: Jul 31, 2026

A Computational Method to Quantify Fly Circadian Activity
13:05

A Computational Method to Quantify Fly Circadian Activity

Published on: October 28, 2017

Dimensional oscillation. A fast variation of energy embedding gives good results with the AMBER potential energy

M E Snow1, G M Crippen

  • 1Scientific Computation Group, University of Michigan, Ann Arbor.

International Journal of Peptide and Protein Research
|August 1, 1991
PubMed

More Related Videos

Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation15:05

Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation

Published on: May 20, 2020

Synthesizing Amino Acids Modified with Reactive Carbonyls in Silico to Assess Structural Effects Using Molecular Dynamics Simulations05:57

Synthesizing Amino Acids Modified with Reactive Carbonyls in Silico to Assess Structural Effects Using Molecular Dynamics Simulations

Published on: April 26, 2024

Related Concept Videos

Energy Diagrams - I01:14

Energy Diagrams - I

The dynamics of a mechanical system can be easily understood by interpreting a potential energy diagram. Since energy is a scalar quantity, the interpretation of the dynamics of the system becomes even simpler.
Take the example of a skater on a parabolic ramp. The potential energy at different points along the ramp will be proportional to the height of the ramp, which varies quadratically with the horizontal position on the ramp. As the skater moves down the ramp from the highest position,...
Oscillations about an Equilibrium Position01:04

Oscillations about an Equilibrium Position

Stability is an important concept in oscillation. If an equilibrium point is stable, a slight disturbance of an object that is initially at the stable equilibrium point will cause the object to oscillate around that point. For an unstable equilibrium point, if the object is disturbed slightly, it will not return to the equilibrium point. There are three conditions for equilibrium points—stable, unstable, and half-stable. A half-stable equilibrium point is also unstable, but is named so because...
Damped Oscillations01:07

Damped Oscillations

In the real world, oscillations seldom follow true simple harmonic motion. A system that continues its motion indefinitely without losing its amplitude is termed undamped. However, friction of some sort usually dampens the motion, so it fades away or needs more force to continue. For example, a guitar string stops oscillating a few seconds after being plucked. Similarly, one must continually push a swing to keep a child swinging on a playground.
Although friction and other non-conservative...
Types of Damping01:20

Types of Damping

If the amount of damping in a system is gradually increased, the period and frequency start to become affected because damping opposes, and hence slows, the back and forth motion (the net force is smaller in both directions). If there is a very large amount of damping, the system does not even oscillate; instead, it slowly moves toward equilibrium. In brief, an overdamped system moves slowly towards equilibrium, whereas an underdamped system moves quickly to equilibrium but will oscillate about...
Concept of Resonance and its Characteristics01:19

Concept of Resonance and its Characteristics

If a driven oscillator needs to resonate at a specific frequency, then very light damping is required. An example of light damping includes playing piano strings and many other musical instruments. Conversely, to achieve small-amplitude oscillations as in a car's suspension system, heavy damping is required. Heavy damping reduces the amplitude, but the tradeoff is that the system responds at more frequencies. Speed bumps and gravel roads prove that even a car's suspension system is not immune...
Kinetic and Potential Energy of a Wave01:10

Kinetic and Potential Energy of a Wave

All forms of waves carry energy; this is directly visualized in nature. For instance, the waves of earthquakes are so intense that they can shake huge concrete buildings, causing them to fall. Loud sounds can damage nerve cells in the inner ear, causing permanent hearing loss. The waves of the oceans can erode beaches. 
In mechanical waves, the amount of energy is related to their amplitude and frequency. In the context of the above examples, large-amplitude earthquakes produce large ground...