Improved grid-based algorithm for Bader charge allocation
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Updated: Jul 17, 2026

Optimizing Sample Preparation for Cryogenic Electron Microscopy
Published on: April 11, 2025
Edward Sanville1, Steven D Kenny, Roger Smith
1Department of Mathematical Sciences, Loughborough University, Loughborough LE11 3TU, United Kingdom. e.sanville@lboro.ac.uk
Abstract:
An improvement to the grid-based algorithm of Henkelman et al. for the calculation of Bader volumes is suggested, which more accurately calculates atomic properties as predicted by the theory of Atoms in Molecules. The CPU time required by the improved algorithm to perform the Bader analysis scales linearly with the number of interatomic surfaces in the system. The new algorithm corrects systematic deviations from the true Bader surface, calculated by the original method and also does not require explicit representation of the interatomic surfaces, resulting in a more robust method of partitioning charge density among atoms in the system. Applications of the method to some small systems are given and it is further demonstrated how the method can be used to define an energy per atom in ab initio calculations.
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