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Published on: September 28, 2022
Phage 3396 from a Streptococcus dysgalactiae subsp. equisimilis pathovar may have its origins in streptococcus
Mark R Davies1, David J McMillan, Gary H Van Domselaar
1Bacterial Pathogenesis Laboratory, Queensland Institute of Medical Research, Brisbane, Queensland 4006, Australia.
Abstract:
Streptococcus dysgalactiae subsp. equisimilis strains (group G streptococcus [GGS]) are largely defined as commensal organisms, which are closely related to the well-defined human pathogen, the group A streptococcus (GAS). While lateral gene transfers are emerging as a common theme in these species, little is known about the mechanisms and role of these transfers and their effect on the population structure of streptococci in nature. It is now becoming evident that bacteriophages are major contributors to the genotypic diversity of GAS and, consequently, are pivotal to the GAS strain structure. Furthermore, bacteriophages are strongly associated with altering the pathogenic potential of GAS. In contrast, little is know about phages from GGS and their role in the population dynamics of GGS. In this study we report the first complete genome sequence of a GGS phage, Phi3396. Exhibiting high homology to the GAS phage Phi315.1, the chimeric nature of Phi3396 is unraveled to reveal evidence of extensive ongoing genetic diversity and dissemination of streptococcal phages in nature. Furthermore, we expand on our recent findings to identify inducible Phi3396 homologues in GAS from a region of endemicity for GAS and GGS infection. Together, these findings provide new insights into not only the population structure of GGS but also the overall population structure of the streptococcal genus and the emergence of pathogenic variants.
Insights
Bacteriophages significantly impact streptococcal genetic diversity and pathogenicity. This study reveals the first genome of a group G streptococcus phage, Phi3396, highlighting extensive gene transfer and its role in streptococcal population structure.
Area of Science:
- Microbiology
- Genomics
- Bacteriophage Research
Background:
- Streptococcus dysgalactiae subsp. equisimilis (GGS) are commensals related to the pathogen Streptococcus pyogenes (GAS).
- Bacteriophages are known to drive genotypic diversity and pathogenicity in GAS.
- The role of phages in GGS population dynamics remains largely unexplored.
Purpose of the Study:
- To characterize the first complete genome sequence of a GGS-derived bacteriophage.
- To investigate the genetic diversity and dissemination of streptococcal phages.
- To understand the implications for GGS and GAS population structures and pathogenicity.
Main Methods:
- Whole-genome sequencing of the GGS phage Phi3396.
- Comparative genomic analysis with known streptococcal phages, particularly GAS phages.
- Identification of phage homologues in GAS clinical isolates.
Main Results:
- The complete genome of Phi3396, a GGS phage, was sequenced.
- Phi3396 exhibits a chimeric structure with high homology to GAS phage Phi315.1, indicating extensive gene transfer.
- Homologues of Phi3396 were identified in GAS strains from an endemic infection region.
Conclusions:
- Phages play a crucial role in the genetic diversity and evolution of both GGS and GAS.
- Evidence suggests ongoing genetic exchange and dissemination of streptococcal phages in nature.
- Understanding phage-host interactions is key to deciphering streptococcal population structures and the emergence of pathogenic variants.
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