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A Protocol for Using Gene Set Enrichment Analysis to Identify the Appropriate Animal Model for Translational Research
Published on: August 16, 2017
Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data
Pedro A F Galante1, Jeff Trimarchi, Constance L Cepko
1Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil. pgalante@ludwig.org.br
Unlabelled:
A critical step in any SAGE, MPSS and SBS data analysis is tag-to-gene assignment. Current available tools are limited by a tag-by-tag annotation process and/or do not provide the dataset that is used to produce a complete tag-to-gene mapping. We developed ACTG, a web-based application that allows a large-scale tag-to-gene mapping using several reference datasets. ACTG can annotate SAGE (14 or 21 bp), MPSS (17 or 20 bp) and SBS (16 bp) data for both human and mouse organisms.
Availability:
http://retina.med.harvard.edu/ACTG/.
Supplementary Information:
Supplementary data are available at Bioinformatics online.
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