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Open source software infrastructure for computational biology and visualization.

S A Blackett1, D Bullivant, C Stevens

  • 1Bioengineering Institute, University of Auckland.

Conference Proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference
|February 7, 2007
PubMed
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The CMISS software package now offers open-source modules for computational biology, enhancing multiscale modeling and visualization. This release promotes broader accessibility and integration in biological research.

Area of Science:

  • Computational biology
  • Scientific visualization
  • Bioinformatics

Background:

  • The Computational Mesoscale Interface Scientific Software (CMISS) package is widely utilized in biological research.
  • It supports multiscale computational biology and advanced visualization techniques.

Purpose of the Study:

  • To announce the open-source release of key CMISS software components.
  • To highlight the availability of modules for field storage, 3D graphics, mathematical operations, and image processing.

Main Methods:

  • Releasing core CMISS modules under an open-source license.
  • Developing new interfaces for enhanced application and internet integration.

Main Results:

  • Major components of the CMISS software suite are now publicly available.

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  • Modules for field storage, 3D graphics, mathematical field operators, and image processing are open source.

    • Conclusions:

    • The open-source release of CMISS components aims to broaden its adoption and facilitate collaborative research.
    • Ongoing interface development will improve integration capabilities with other scientific tools and the internet.