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Updated: Jul 16, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
[DNA methylation and cancer]
1Dept. of Epigenetic Carcinogenesis, The JFCR Cancer Institute.
Abstract:
Tumor suppressor genes can be silenced by DNA methylation during cancer development. Aberrant DNA methylation is closely associated with histone deacetylases and histone methyltransferases that can modify histone amino-terminal lysines and develop specific histone codes, resulting in inactive chromatin formation. These processes change epigenetic information that builds up abnormal chromatin structure, and creates the unique features of cancer cells. It is well known that thousands of genes are deregulated in cancer cells. Epigenetic alterations involving aberrant DNA methylation is a possible mechanism that can explain the genome-wide abnormality of gene expression. The mechanism responsible for the aberrant DNA methylation is unclear now, however it seems that de novo DNA methyltransferases (DNMTs) play an important role in the process. DNMT3 A and DNMT3B are thought to be de novo DNMTs in human. A nucleoside analogue of cytidine induces demethylation of DNA in cancer cells by inhibiting the function of DNMTs. It is significant to elucidate precise mechanisms of aberrant DNA methylation and develop small molecules that can inhibit methylation.
Insights
Aberrant DNA methylation silences tumor suppressor genes in cancer. Inhibiting DNA methyltransferases (DNMTs) with cytidine analogues offers a potential therapeutic strategy by inducing DNA demethylation.
Area of Science:
- Epigenetics
- Cancer Biology
- Molecular Oncology
Background:
- Tumor suppressor gene silencing via DNA methylation is a hallmark of cancer development.
- Aberrant DNA methylation is linked to histone modifications, leading to inactive chromatin and abnormal gene expression.
- Epigenetic alterations, particularly DNA methylation, are implicated in the genome-wide deregulation of genes observed in cancer cells.
Purpose of the Study:
- To investigate the role of aberrant DNA methylation in cancer.
- To explore the involvement of de novo DNA methyltransferases (DNMTs) in aberrant methylation.
- To identify potential therapeutic strategies targeting DNA methylation.
Main Methods:
- Analysis of DNA methylation patterns in cancer cells.
- Investigation of histone deacetylases and methyltransferases' role in epigenetic modifications.
- Evaluation of nucleoside analogues of cytidine as inhibitors of DNMTs.
Main Results:
- Aberrant DNA methylation is a key mechanism in cancer, silencing tumor suppressor genes.
- De novo DNMTs, specifically DNMT3A and DNMT3B, are crucial in aberrant DNA methylation processes.
- Cytidine nucleoside analogues demonstrated the ability to inhibit DNMT function and induce DNA demethylation in cancer cells.
Conclusions:
- Epigenetic alterations, especially aberrant DNA methylation, contribute significantly to cancer cell characteristics.
- Understanding the precise mechanisms of aberrant DNA methylation is critical for cancer therapy.
- Targeting DNMTs with small molecules represents a promising avenue for developing novel anti-cancer treatments.
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