Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

What Are Outliers?01:12

What Are Outliers?

Outliers are observed data points that are far from the least squares line. They have unusual values and need to be examined carefully. Though an outlier may result from erroneous data, at other times, it may hold valuable information about the population under study and should be included in the data. Hence, it is crucial to examine what causes a data point to be an outlier.
The z score is used to find outliers or unusual values. It should be noted that any values beyond -2 and +2 are...
Outliers and Influential Points01:08

Outliers and Influential Points

An outlier is an observation of data that does not fit the rest of the data. It is sometimes called an extreme value. When you graph an outlier, it will appear not to fit the pattern of the graph. Some outliers are due to mistakes (for example, writing down 50 instead of 500), while others may indicate that something unusual is happening. Outliers are present far from the least squares line in the vertical direction. They have large "errors," where the "error" or residual is the vertical...
Quantifying and Rejecting Outliers: The Grubbs Test01:02

Quantifying and Rejecting Outliers: The Grubbs Test

Sometimes, a data set can have a recorded numerical observation that greatly  deviates from the rest of the data. Assuming that the data is normally distributed, a statistical method called the Grubbs test can be used to determine whether the observation is truly an outlier.  To perform a two-tailed Grubbs test, first, calculate the absolute difference between the outlier and the mean. Then, calculate the ratio between this difference and the standard deviation of the sample. This number is...
Detection of Gross Error: The Q Test01:00

Detection of Gross Error: The Q Test

When one or more data points appear far from the rest of the data, there is a need to determine whether they are outliers and whether they should be eliminated from the data set to ensure an accurate representation of the measured value. In many cases, outliers arise from gross errors (or human errors) and do not accurately reflect the underlying phenomenon. In some cases, however, these apparent outliers reflect true phenomenological differences. In these cases, we can use statistical methods...
Modified Boxplots00:57

Modified Boxplots

A standard box and whisker plot informs us about the spread of the data in a given sample. One can identify the minimum value, maximum value, first quartile value, second quartile or median value, and third quartile.
However, the box plot does not tell the reader about outliers - values that lie far from the center of the data. We can modify the standard box and whisker plot to identify the outliers and visualize the actual spread of the data in a sample.
Initially, we calculate the adjusted...
Detection of Black Holes01:10

Detection of Black Holes

Although black holes were theoretically postulated in the 1920s, they remained outside the domain of observational astronomy until the 1970s.
Their closest cousins are neutron stars, which are composed almost entirely of neutrons packed against each other, making them extremely dense. A neutron star has the same mass as the Sun but its diameter is only a few kilometers. Therefore, the escape velocity from their surface is close to the speed of light.
Not until the 1960s, when the first neutron...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Reconstruction from multi-planar MRI with foundation models for uterine fibroid analysis.

NPJ digital medicine·2026
Same author

Lignanamides, alkaloids, and other constituents from stems of <i>Tinospora crispa</i>.

Natural product research·2026
Same author

Brain Magnetic Resonance Elastography Experiments With an Electromagnetic Actuator.

Current protocols·2026
Same author

Magnetically Guided Microrobots for Targeted Drug Delivery.

Advanced healthcare materials·2026
Same author

Multiscale measurement of brain tissue and cell biomechanics using a mouse model.

Biophysics reports·2026
Same author

Lanostane-type triterpenoids from the fungus <i>Inonotus obliquus</i>.

Natural product research·2025

Related Experiment Video

Updated: Jul 16, 2026

Three-Dimensional Shape Modeling and Analysis of Brain Structures
05:33

Three-Dimensional Shape Modeling and Analysis of Brain Structures

Published on: November 14, 2019

Outlier detection and handling for robust 3-D active shape models search.

Karim Lekadir1, Robert Merrifield, Guang-Zhong Yang

  • 1Royal Society/Wolfson Foundation Medical Image Computing Laboratory, Department of Computing, Imperial College London, U.K.

IEEE Transactions on Medical Imaging
|February 20, 2007
PubMed
Summary

This study introduces a novel outlier handling method for 3-D active shape models, improving volumetric segmentation accuracy. The technique effectively identifies and replaces erroneous feature points, enhancing segmentation robustness.

More Related Videos

Building Up Skin Models for Numerous Applications - from Two-Dimensional (2D) Monoculture to Three-Dimensional (3D) Multiculture
08:32

Building Up Skin Models for Numerous Applications - from Two-Dimensional (2D) Monoculture to Three-Dimensional (3D) Multiculture

Published on: October 20, 2023

Related Experiment Videos

Last Updated: Jul 16, 2026

Three-Dimensional Shape Modeling and Analysis of Brain Structures
05:33

Three-Dimensional Shape Modeling and Analysis of Brain Structures

Published on: November 14, 2019

Building Up Skin Models for Numerous Applications - from Two-Dimensional (2D) Monoculture to Three-Dimensional (3D) Multiculture
08:32

Building Up Skin Models for Numerous Applications - from Two-Dimensional (2D) Monoculture to Three-Dimensional (3D) Multiculture

Published on: October 20, 2023

Area of Science:

  • Medical Imaging
  • Computer Vision
  • Computational Anatomy

Background:

  • Volumetric segmentation using 3-D active shape models (ASMs) is crucial for medical image analysis.
  • Outliers in feature points can significantly degrade the accuracy and convergence of ASM-based segmentation.
  • Existing methods often struggle with a high density of erroneous feature points.

Purpose of the Study:

  • To develop a robust outlier handling method for 3-D ASMs.
  • To improve the accuracy and convergence of volumetric segmentation frameworks.
  • To address the challenge of significant erroneous feature points in segmentation tasks.

Main Methods:

  • A novel shape metric invariant to scaling, rotation, and translation using interlandmark distance ratios.
  • Statistical tolerance intervals derived from training data to identify outlier feature points.
  • A replacement strategy for outliers based on a statistical tolerance model and valid point positions.
  • Introduction of a geometrically weighted fitness measure for feature point detection.

Main Results:

  • The proposed method effectively handles outliers, regardless of their extremity or quantity.
  • Improved convergence and robustness of the 3-D active shape model segmentation framework.
  • Successful validation in 3-D magnetic resonance (MR) segmentation of carotid arteries and left ventricle myocardial borders.

Conclusions:

  • The new outlier handling method significantly enhances the reliability of 3-D ASM volumetric segmentation.
  • The technique offers a robust solution for dealing with erroneous feature points in complex medical imaging scenarios.
  • Demonstrated practical utility in segmenting critical anatomical structures from 3-D MR images.