Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

NeuroExtract: facilitating neuroscience-oriented retrieval from broadly-focused bioscience databases using text-based

Chiquito J Crasto1, Peter Masiar, Perry L Miller

  • 1Center for Medical Informatics, New Haven, CT 06511, USA. chiquito.crasto@yale.edu

Journal of the American Medical Informatics Association : JAMIA
|March 3, 2007
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Hepatic transcriptome profiling unveils candidate genes in cattle with liver abscesses under the influence of beef genetics in dairy cattle.

PloS one·2025
Same author

Cross study transcriptomic investigation of Alzheimer's brain tissue discoveries and limitations.

Scientific reports·2025
Same author

Effect of the Tool to Reduce Inappropriate Medications on Medication Communication and Deprescribing.

Journal of the American Geriatrics Society·2017
Same author

Utilizing patient data from the veterans administration electronic health record to support web-based clinical decision support: informatics challenges and issues from three clinical domains.

BMC medical informatics and decision making·2017
Same author

Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience.

Journal of computational neuroscience·2016
Same author

Development of the Tool to Reduce Inappropriate Medications (TRIM): A Clinical Decision Support System to Improve Medication Prescribing for Older Adults.

Pharmacotherapy·2016
Same journal

Digital divide in clinical and operational artificial intelligence adoption and implementation stages: US hospital diffusion patterns and AI deserts.

Journal of the American Medical Informatics Association : JAMIA·2026
Same journal

Extending the fundamental theorem of biomedical informatics: a proposal and illustrative examples.

Journal of the American Medical Informatics Association : JAMIA·2026
Same journal

Human factors methods for designing safe health information technology: what do the experts think?

Journal of the American Medical Informatics Association : JAMIA·2026
Same journal

Equity-by-design for socially assistive robots as digital health tools.

Journal of the American Medical Informatics Association : JAMIA·2026
Same journal

Orchestrator multi-agent clinical decision support system for secondary headache diagnosis in primary care.

Journal of the American Medical Informatics Association : JAMIA·2026
Same journal

CUI-Curate: a GraphRAG-based framework for automated clinical concept curation for NLP applications.

Journal of the American Medical Informatics Association : JAMIA·2026
See all related articles

NeuroExtract is a pilot system for retrieving neuroscience information online. It organizes data from sources like SWISSPROT, GEO, and PDB for easier searching and access.

Area of Science:

  • Neuroscience
  • Bioinformatics
  • Information Science

Background:

  • The neurosciences generate vast amounts of data distributed across various internet resources.
  • Integrating and retrieving this information efficiently is a significant challenge for researchers.
  • Existing search methods often lack domain-specific context, hindering effective data discovery.

Purpose of the Study:

  • To describe the development and implementation of NeuroExtract, a pilot system for integrated information retrieval in neurosciences.
  • To demonstrate a method for extracting, organizing, and searching neuroscience-related data from internet sources.
  • To explore the potential of query mediation approaches for integrating diverse online resources.

Main Methods:

  • Developed NeuroExtract to extract descriptive metadata using domain-specific queries.

Related Experiment Videos

  • Retrieved, processed, and organized data into structured text files.
  • Implemented text-based queries for searching organized data and presented results with descriptions and URLs.
  • Applied the system to three bioscience resources: SWISSPROT, GEO, and PDB.

    • Main Results:

    • Successfully implemented NeuroExtract for neuroscience-relevant data within SWISSPROT, GEO, and PDB.
    • Demonstrated the feasibility of integrated retrieval through metadata extraction and structured data organization.
    • Provided a user-friendly web interface for accessing organized neuroscience information.

    Conclusions:

    • NeuroExtract represents a viable first step towards integrated retrieval of internet-based neuroscience information.
    • The developed approach shows promise for facilitating the integration of multiple internet-accessible resources.
    • Further exploration of query mediation is recommended to enhance the integration of neuroscientific data resources.