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Updated: Jul 16, 2026

Analysis of RNA Processing Reactions Using Cell Free Systems: 3' End Cleavage of Pre-mRNA Substrates in vitro
Published on: May 3, 2014
c-Src activates endonuclease-mediated mRNA decay
Yong Peng1, Daniel R Schoenberg
1Department of Molecular and Cellular Biochemistry, The RNA Group and the Comprehensive Cancer Center, The Ohio State University, Columbus, OH 43210, USA.
Abstract:
The mRNA endonuclease PMR1 initiates mRNA decay by forming a selective complex with its translating substrate mRNA. Previous work showed that the ability of PMR1 to target to polysomes and activate decay depends on the phosphorylation of a tyrosine residue at position 650. The current study shows that c-Src is responsible for activating this mRNA decay pathway. c-Src was recovered with immunoprecipitated PMR1, and it phosphorylates PMR1 in vitro and in vivo. The interaction with c-Src involves two domains of PMR1: Y650 and a series of proline-rich SH3 peptides in the N terminus. In cells with little c-Src, PMR1 targeting to polysomes is induced by constitutively active c-Src but not by inactive forms of the kinase. Similarly, only active c-Src induces PMR1-mediated mRNA decay. Finally, we show that EGF rapidly induces c-Src phosphorylation of PMR1, providing a direct link between tyrosine kinase-mediated signal transduction and mRNA decay.
Insights
The protein c-Src activates mRNA decay by phosphorylating PMR1, a key enzyme in the process. This discovery links signal transduction pathways to mRNA degradation.
Area of Science:
- Molecular Biology
- Biochemistry
- Cell Biology
Background:
- The mRNA endonuclease PMR1 initiates mRNA decay.
- PMR1's targeting to polysomes and decay activation depend on tyrosine phosphorylation at position 650.
Purpose of the Study:
- To identify the kinase responsible for PMR1 phosphorylation.
- To elucidate the mechanism linking signal transduction to mRNA decay.
Main Methods:
- Immunoprecipitation to detect PMR1-c-Src complex formation.
- In vitro and in vivo phosphorylation assays.
- Analysis of PMR1 activity in cells with varying c-Src levels.
- Epidermal Growth Factor (EGF) stimulation experiments.
Main Results:
- c-Src was identified as the kinase phosphorylating PMR1.
- c-Src interacts with PMR1 via Y650 and N-terminal SH3-binding motifs.
- Active c-Src is required for PMR1 polysome targeting and mRNA decay.
- EGF stimulation rapidly induces c-Src-mediated PMR1 phosphorylation.
Conclusions:
- c-Src is the specific kinase that activates the PMR1-mediated mRNA decay pathway.
- This study establishes a direct link between tyrosine kinase signaling and mRNA degradation processes.
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