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Updated: Jul 16, 2026

Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
Signaling-dependent and coordinated regulation of transcription, splicing, and translation resides in a single
Qingchang Meng1, Suresh K Rayala, Anupama E Gururaj
1Molecular and Cellular Oncology, University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA.
Abstract:
Transcription, splicing, and translation are potentially coordinately regulatable in a temporospatial-dependent manner, although supporting experimental evidence for this notion is scarce. Yeast two-hybrid screening of a mammary gland cDNA library with human p21-activated kinase 1 (Pak1) as bait identified polyC-RNA-binding protein 1 (PCBP1), which controls translation from mRNAs containing the DICE (differentiation control element). Mitogenic stimulation of human cells phosphorylated PCBP1 on threonines 60 and 127 in a Pak1-sensitive manner. Pak1-dependent phosphorylation of PCBP1 released its binding and translational inhibition from a DICE-minigene. Overexpression of PCBP1 also inhibited the translation of the endogenous L1 cell adhesion molecule mRNA, which contains two DICE motifs in the 3' untranslated region. We also found that Pak1 activation led to an increased nuclear retention of PCBP1, recruitment to the eukaryotic translation initiation factor 4E (eIF4E) promoter, and stimulation of eIF4E expression in a Pak1-sensitive manner. Moreover, mitogenic stimulation promoted Pak1- and PCBP1-dependent alternative splicing and exon inclusion from a CD44 minigene. The alternative splicing functions of PCBP1 were in turn mediated by its intrinsic interaction with Caper alpha, a U2 snRNP auxiliary factor-related protein previously implicated in RNA splicing. These findings establish the principle that a single coregulator can function as a signal-dependent and coordinated regulator of transcription, splicing, and translation.
Insights
A novel protein, PCBP1, acts as a master regulator, controlling gene transcription, RNA splicing, and protein translation. Pak1 kinase activates PCBP1, coordinating these crucial cellular processes in response to signals.
Area of Science:
- Molecular Biology
- Gene Regulation
- Cell Signaling
Background:
- Coordinated regulation of transcription, splicing, and translation is crucial but poorly understood.
- Evidence for a single molecule controlling these processes is limited.
Purpose of the Study:
- To investigate the role of p21-activated kinase 1 (Pak1) in regulating gene expression.
- To identify proteins interacting with Pak1 and their functions in gene regulation.
Main Methods:
- Yeast two-hybrid screening to identify Pak1 interacting proteins.
- Analysis of PCBP1 phosphorylation, localization, and function in response to mitogenic stimulation.
- Reporter assays to assess translational control by PCBP1.
- Minigene assays to study alternative splicing regulation.
Main Results:
- Pak1 interacts with PCBP1, a regulator of translation.
- Pak1-dependent phosphorylation of PCBP1 releases translational inhibition of DICE-containing mRNAs.
- Pak1 activation increases PCBP1 nuclear retention and stimulates eIF4E expression.
- PCBP1 mediates Pak1-dependent alternative splicing via interaction with Caper alpha.
Conclusions:
- PCBP1 functions as a signal-dependent, coordinated regulator of transcription, splicing, and translation.
- Pak1-PCBP1 pathway integrates signaling to control multiple steps of gene expression.
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