The essential Drosophila ATP-binding cassette domain protein, pixie, binds the 40 S ribosome in an ATP-dependent

Ditte S Andersen1, Sally J Leevers

  • 1Growth Regulation Laboratory, Cancer Research UK London Research Institute, P O Box 123, 44 Lincoln's Inn Fields, London WC2A 3PX, United Kingdom.

Insights

The Drosophila pixie gene is crucial for translation initiation. This essential gene, Pixie, aids in ribosome assembly, ensuring efficient protein synthesis across eukaryotes.

Area of Science:

  • Molecular Biology
  • Genetics
  • Biochemistry

Background:

  • The Drosophila gene, pixie, is essential for growth and translation.
  • Pixie is the fly ortholog of human RLI and yeast Rli1p, involved in translation and ribosome biogenesis.
  • These proteins are soluble ATP-binding cassette proteins with iron-sulfur clusters.

Purpose of the Study:

  • To investigate the role of Pixie in translation initiation.
  • To determine Pixie's association with translation machinery.
  • To elucidate the conserved function of Pixie in eukaryotes.

Main Methods:

  • Isolation of Pixie complexes from Drosophila cells.
  • Analysis of polysome profiles using double-stranded RNA interference (dsRNAi).
  • Sucrose density gradient centrifugation to study Pixie-ribosome interactions.

Main Results:

  • Pixie was isolated in complex with eukaryotic translation initiation factor 3 and ribosomal proteins.
  • Depletion of Pixie led to increased empty 80S ribosomes and decreased polysomes.
  • Pixie associates with the 40S ribosomal subunit in an ATP-dependent manner.

Conclusions:

  • Pixie is required for normal translation initiation.
  • Pixie likely plays a catalytic role in assembling translation initiation complexes.
  • The function of Pixie in translation initiation is conserved from yeast to higher eukaryotes.

Related Concept Videos

piRNA - Piwi-interacting RNAs02:57

piRNA - Piwi-interacting RNAs

PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...
Initiation of Translation02:33

Initiation of Translation

Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
Initiation of Translation02:33

Initiation of Translation

Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
Improving Translational Accuracy02:07

Improving Translational Accuracy

Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
Leaky Scanning02:28

Leaky Scanning

During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R stands for...
Post-translational Translocation of Proteins to the RER01:27

Post-translational Translocation of Proteins to the RER

A sizable fraction of proteins destined for ER are first synthesized in the cell cytosol and then transported across the ER membrane–a process called post-translational translocation. Similar to cotranslationally translocated proteins, these proteins also use the Sec translocon complex to enter the ER lumen.
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...