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Updated: Jul 16, 2026

Toeprinting Analysis of Translation Initiation Complex Formation on Mammalian mRNAs
Published on: May 10, 2018
The essential Drosophila ATP-binding cassette domain protein, pixie, binds the 40 S ribosome in an ATP-dependent
Ditte S Andersen1, Sally J Leevers
1Growth Regulation Laboratory, Cancer Research UK London Research Institute, P O Box 123, 44 Lincoln's Inn Fields, London WC2A 3PX, United Kingdom.
Insights
The Drosophila pixie gene is crucial for translation initiation. This essential gene, Pixie, aids in ribosome assembly, ensuring efficient protein synthesis across eukaryotes.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- The Drosophila gene, pixie, is essential for growth and translation.
- Pixie is the fly ortholog of human RLI and yeast Rli1p, involved in translation and ribosome biogenesis.
- These proteins are soluble ATP-binding cassette proteins with iron-sulfur clusters.
Purpose of the Study:
- To investigate the role of Pixie in translation initiation.
- To determine Pixie's association with translation machinery.
- To elucidate the conserved function of Pixie in eukaryotes.
Main Methods:
- Isolation of Pixie complexes from Drosophila cells.
- Analysis of polysome profiles using double-stranded RNA interference (dsRNAi).
- Sucrose density gradient centrifugation to study Pixie-ribosome interactions.
Main Results:
- Pixie was isolated in complex with eukaryotic translation initiation factor 3 and ribosomal proteins.
- Depletion of Pixie led to increased empty 80S ribosomes and decreased polysomes.
- Pixie associates with the 40S ribosomal subunit in an ATP-dependent manner.
Conclusions:
- Pixie is required for normal translation initiation.
- Pixie likely plays a catalytic role in assembling translation initiation complexes.
- The function of Pixie in translation initiation is conserved from yeast to higher eukaryotes.
Abstract:
The Drosophila gene, pixie, is an essential gene required for normal growth and translation. Pixie is the fly ortholog of human RLI, which was first identified as an RNase L inhibitor, and yeast Rli1p, which has recently been shown to play a role in translation initiation and ribosome biogenesis. These proteins are all soluble ATP-binding cassette proteins with two N-terminal iron-sulfur clusters. Here we demonstrate that Pixie can be isolated from cells in complex with eukaryotic translation initiation factor 3 and ribosomal proteins of the small subunit. In addition, our analysis of polysome profiles reveals that double-stranded RNA interference-mediated depletion of Pixie results in an increase in empty 80 S ribosomes and a corresponding decrease in polysomes. Thus Pixie is required for normal levels of translation initiation. We also find that Pixie associates with the 40 S subunit on sucrose density gradients in an ATP-dependent manner. Our observations are consistent with Pixie playing a catalytic role in the assembly of complexes required for translation initiation. Thus, the function of this soluble ATP-binding cassette domain protein family in translation initiation has been conserved from yeast through to higher eukaryotes.
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