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Updated: Jul 15, 2026

Measurement of Specific Mycobacterial Mistranslation Rates with Gain-of-function Reporter Systems
Published on: April 26, 2019
Hypermutagenesis in mutA cells is mediated by mistranslational corruption of polymerase, and is accompanied by
Abu Amar M Al Mamun1, Satyendra Gautam, M Zafri Humayun
1University of Medicine and Dentistry of New Jersey, New Jersey Medical School, Department of Microbiology and Molecular Genetics, International Center for Public Health, 225 Warren Street, Newark, NJ 07101-1709, USA.
Abstract:
Elevated mistranslation induces a mutator response termed translational stress-induced mutagenesis (TSM) that is mediated by an unidentified modification of DNA polymerase III. Here we address two questions: (i) does TSM result from direct polymerase corruption, or from an indirect pathway triggered by increased protein turnover? (ii) Why are homologous recombination functions required for the expression of TSM under certain conditions, but not others? We show that replication of bacteriophage T4 in cells expressing the mutA allele of the glyVtRNA gene (Asp-Gly mistranslation), leads to both increased mutagenesis, and to an altered mutational specificity, results that strongly support mistranslational corruption of DNA polymerase. We also show that expression of mutA, which confers a recA-dependent mutator phenotype, leads to increased lambdoid prophage induction (selectable in vivo expression technology assay), suggesting that replication fork collapse occurs more frequently in mutA cells relative to control cells. No such increase in prophage induction is seen in cells expressing alaVGlu tRNA (Glu-->Ala mistranslation), in which the mutator phenotype is recA-independent. We propose that replication fork collapse accompanies episodic hypermutagenic replication cycles in mutA cells, requiring homologous recombination functions for fork recovery, and therefore, for mutation recovery. These findings highlight hitherto under-appreciated links among translation, replication and recombination, and suggest that translational fidelity, which is affected by genetic and environmental signals, is a key modulator of replication fidelity.
Insights
Mistranslation corrupts DNA polymerase, causing mutations. Homologous recombination is required for this process only when specific mistranslations occur, highlighting links between translation, replication, and recombination.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Elevated mistranslation triggers translational stress-induced mutagenesis (TSM).
- TSM is mediated by an unknown modification of DNA polymerase III.
- The precise mechanisms and conditions influencing TSM remain unclear.
Purpose of the Study:
- Investigate whether TSM arises from direct polymerase damage or increased protein turnover.
- Determine the conditions under which homologous recombination functions are necessary for TSM.
- Elucidate the links between translation, replication, and recombination fidelity.
Main Methods:
- Replication of bacteriophage T4 in cells with specific tRNA mutations (mutA and alaVGlu).
- Analysis of mutagenesis and mutational specificity.
- Assay of lambdoid prophage induction to assess replication fork collapse.
- RecA-dependent and independent mutator phenotype analysis.
Main Results:
- Asp-Gly mistranslation (mutA) directly corrupts DNA polymerase, increasing mutagenesis and altering specificity.
- mutA expression leads to recA-dependent increased prophage induction, indicating replication fork collapse.
- Glu-Ala mistranslation (alaVGlu) causes a recA-independent mutator phenotype without increased prophage induction.
- Homologous recombination functions are required for mutation recovery in mutA cells, linked to replication fork recovery.
Conclusions:
- Mistranslational corruption of DNA polymerase is a direct cause of TSM.
- Replication fork collapse and subsequent homologous recombination are critical for TSM under specific mistranslation conditions (e.g., Asp-Gly).
- Translational fidelity is a key regulator of replication fidelity, with implications for genome stability.
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