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Detection of Alternative Splicing During Epithelial-Mesenchymal Transition
Published on: October 9, 2014
Aberrant splicing is a common mutational mechanism in MKS1, a key player in Meckel-Gruber syndrome
Valeska Frank1, Nadina Ortiz Brüchle, Silke Mager
1Department of Human Genetics, RWTH Aachen University, Aachen, Germany.
Abstract:
Meckel-Gruber syndrome (MKS) is an autosomal recessive, usually lethal multisystemic disorder characterized by early developmental anomalies of the central nervous system, cystic kidney dysplasia, hepatobiliary ductal plate malformation, and postaxial polydactyly. Three MKS loci have been mapped and recently, two genes were identified: MKS1 on 17q22 in Caucasian kindreds and MKS3 on 8q22 in Omani and Pakistani families, putting MKS on the growing list of ciliary disorders ("ciliopathies"). We performed linkage analysis for MKS1-3 in 14 consanguineous and/or multiplex families of different ethnic origins with histologic diagnosis and at least three classic MKS manifestations in each kindred. Unexpectedly, only five families were linked to any of the known MKS loci, clearly indicating further locus heterogeneity. All five families showed homozygosity for MKS1 and, intriguingly, were of non-Caucasian origin. MKS1 sequencing revealed no mutation in two of these pedigrees, whereas different, novel splicing defects were identified in the three other families and an additional sporadic German patient. Given that all of our mutations and two of the in total four known MKS1 changes cause aberrant splicing (while the other two known mutations were frameshift mutations), we hypothesize that splicing defects are a crucial mutational mechanism in MKS1 which apparently is one of the main loci and key players in MKS. Our results indicate that MKS1 mutations are not restricted to the Caucasian gene pool and suggest further genetic heterogeneity for MKS. Overall, our data have immediate implications for genetic counselling and testing approaches in MKS.
Insights
Meckel-Gruber syndrome (MKS) is a severe genetic disorder. This study finds MKS1 gene mutations, particularly splicing defects, are a key cause, extending beyond Caucasian populations and highlighting genetic heterogeneity.
Area of Science:
- Genetics and Developmental Biology
- Ciliopathies and Human Disease Genetics
Background:
- Meckel-Gruber syndrome (MKS) is a lethal, autosomal recessive disorder featuring severe developmental anomalies.
- Known MKS genes include MKS1 and MKS3, linking MKS to the broader class of ciliopathies.
- Previous research identified MKS1 in Caucasian families and MKS3 in Middle Eastern/South Asian families.
Purpose of the Study:
- To investigate genetic heterogeneity in Meckel-Gruber syndrome across diverse ethnic groups.
- To identify the specific genetic cause in 14 families with suspected MKS.
- To analyze the role of MKS1 and MKS3 loci in MKS pathogenesis.
Main Methods:
- Performed linkage analysis for MKS1-3 loci in 14 families with MKS.
- Conducted MKS1 gene sequencing in families linked to the MKS1 locus.
- Analyzed mutation types, focusing on splicing defects and frameshift mutations.
Main Results:
- Only five of the 14 families showed linkage to known MKS loci (MKS1 or MKS3).
- All five linked families were homozygous for MKS1 and of non-Caucasian origin.
- Novel splicing defects in MKS1 were identified in three families and one sporadic patient, alongside previously known mutations.
Conclusions:
- MKS1 mutations are a significant cause of Meckel-Gruber syndrome and are not limited to Caucasian populations.
- Splicing defects represent a crucial mutational mechanism within the MKS1 gene.
- The findings indicate substantial genetic heterogeneity for MKS and have implications for genetic counseling and diagnostic strategies.
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