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Published on: October 4, 2019
Developmentally regulated piRNA clusters implicate MILI in transposon control
Alexei A Aravin1, Ravi Sachidanandam, Angelique Girard
1Watson School of Biological Sciences, Cold Spring Harbor Laboratory, Howard Hughes Medical Institute (HHMI), 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.
Abstract:
Nearly half of the mammalian genome is composed of repeated sequences. In Drosophila, Piwi proteins exert control over transposons. However, mammalian Piwi proteins, MIWI and MILI, partner with Piwi-interacting RNAs (piRNAs) that are depleted of repeat sequences, which raises questions about a role for mammalian Piwi's in transposon control. A search for murine small RNAs that might program Piwi proteins for transposon suppression revealed developmentally regulated piRNA loci, some of which resemble transposon master control loci of Drosophila. We also find evidence of an adaptive amplification loop in which MILI catalyzes the formation of piRNA 5' ends. Mili mutants derepress LINE-1 (L1) and intracisternal A particle and lose DNA methylation of L1 elements, demonstrating an evolutionarily conserved role for PIWI proteins in transposon suppression.
Insights
Mammalian PIWI proteins, MIWI and MILI, suppress transposons through piRNAs. Mili mutants show derepressed LINE-1 elements and loss of DNA methylation, confirming PIWI proteins
Area of Science:
- Genomics and Molecular Biology
- Epigenetics and Transposon Regulation
Background:
- Approximately 50% of mammalian genomes consist of repetitive sequences, including transposons.
- Piwi proteins are known to control transposons in Drosophila, but their role in mammals is unclear due to piRNAs lacking repeat sequences.
Purpose of the Study:
- To investigate the role of mammalian Piwi proteins (MIWI and MILI) in transposon suppression.
- To identify small RNAs that program Piwi proteins for transposon control in mice.
Main Methods:
- Bioinformatic analysis of murine small RNAs to identify piRNA loci.
- Characterization of piRNA loci for similarities to Drosophila transposon control elements.
- Analysis of Mili mutant mice for transposon derepression and DNA methylation changes.
Main Results:
- Discovery of developmentally regulated piRNA loci in mice, some resembling Drosophila transposon master control loci.
- Evidence for an adaptive amplification loop involving MILI in piRNA 5' end formation.
- Mili mutants exhibit derepression of LINE-1 and intracisternal A particle elements, with associated loss of L1 DNA methylation.
Conclusions:
- Mammalian PIWI proteins, particularly MILI, play a crucial role in transposon suppression.
- An evolutionarily conserved mechanism of PIWI-mediated transposon control exists in mammals.
- The findings highlight the importance of piRNAs and PIWI proteins in maintaining genome stability.
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