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Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner

J Waldispühl1, P Clote

  • 1Department of Biology, Boston College, Chestnut Hill, Massachusetts, USA.

Journal of Computational Biology : a Journal of Computational Molecular Cell Biology
|April 26, 2007
PubMed

Abstract:

An RNA secondary structure is saturated if no base pairs can be added without violating the definition of secondary structure. Here we describe a new algorithm, RNAsat, which for a given RNA sequence a, an integral temperature 0

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