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Methods to Discover Alternative Promoter Usage and Transcriptional Regulation of Murine Bcrp1
Published on: May 27, 2016
Differential promoter methylation may be a key molecular mechanism in regulating BubR1 expression in cancer cells
Hye-Young Park1, Yoon-Kyung Jeon, Hyun-Jin Shin
1Department of Molecular Cell Biology, Center for Molecular Medicine, Samsung Biomedical Research Institute, Sungkyunkwan University School of Medicine, Suwon 440-746, Korea.
Abstract:
The BubR1 mitotic-checkpoint protein monitors proper attachment of microtubules to kinetochores, and links regulation of chromosome-spindle attachment to mitotic-checkpoint signaling. Thus, disruption of BubR1 activity results in a loss of checkpoint control, chromosomal instability caused by a premature anaphase, and/or the early onset of tumorigenesis. The mechanisms by which deregulation and/or abnormalities of BubR1 expression operate, however, remain to be elucidated. In this study, we demonstrate that levels of BubR1 expression are significantly increased by demethylation. Bisulfite sequencing analysis revealed that the methylation status of two CpG sites in the essential BubR1 promoter appear to be associated with BubR1 expression levels. Associations of MBD2 and HDAC1 with the BubR1 promoter were significantly relieved by addition of 5-aza-2'-deoxycytidine, an irreversible DNA methyltransferase inhibitor. However, genomic DNA isolated from 31 patients with colorectal carcinomas exhibited a +84A/G polymorphic change in approximately 60% of patients, but this polymorphism had no effect on promoter activity. Our findings indicate that differential regulation of BubR1 expression is associated with changes in BubR1 promoter hypermethylation patterns, but not with promoter polymorphisms, thus providing a novel insight into the molecular regulation of BubR1 expression in human cancer cells.
Insights
BubR1 protein is crucial for cell division and preventing cancer. Its expression is regulated by DNA methylation in the promoter region, offering new insights into cancer development.
Area of Science:
- Molecular Biology
- Cell Biology
- Cancer Research
Background:
- BubR1 is a key mitotic-checkpoint protein regulating chromosome-spindle attachment and preventing genomic instability.
- Deregulation of BubR1 expression is implicated in tumorigenesis, but the underlying mechanisms are not fully understood.
Purpose of the Study:
- To investigate the molecular mechanisms regulating BubR1 expression, particularly focusing on promoter methylation and polymorphisms.
- To elucidate how these regulatory mechanisms contribute to human cancer.
Main Methods:
- Bisulfite sequencing to analyze CpG site methylation status in the BubR1 promoter.
- Treatment with 5-aza-2'-deoxycytidine to assess the role of DNA methylation.
- Analysis of a +84A/G polymorphism in the BubR1 gene in colorectal cancer patients.
Main Results:
- BubR1 expression levels significantly increased upon DNA demethylation.
- Specific CpG sites in the BubR1 promoter showed an association with expression levels.
- Demethylation relieved the association of MBD2 and HDAC1 with the BubR1 promoter.
- A common +84A/G polymorphism in the BubR1 gene did not affect promoter activity.
Conclusions:
- Differential regulation of BubR1 expression in cancer cells is linked to alterations in promoter hypermethylation patterns.
- Promoter polymorphisms do not significantly influence BubR1 expression in colorectal cancer.
- Findings provide novel insights into the epigenetic regulation of BubR1 in human cancer.
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