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Updated: Jul 15, 2026

Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Targeting aberrant chromatin structure in colorectal carcinomas
Kazuo Konishi1, Jean-Pierre J Issa
1Department of Leukemia, University of Texas, MD Anderson Cancer Center, Houston, TX 77030, USA.
Abstract:
Epigenetic processes such as DNA methylation and histone modifications are now recognized as critical events for regulation of gene expression in mammalian cells and affect gene function without a change in coding sequence. Neoplastic cells often show profound epigenetic alterations that contribute to tumorigenesis by altering expression of critical genes. In colorectal tumorigenesis, detailed analysis led to a hypothesis on a critical role for epigenetic changes in age-related cancer susceptibility and separately identified a distinct phenotype termed the CpG island methylator phenotype. CpG island methylator phenotype-positive colorectal cancers have significant associations with female sex, older age, proximal location, mucinous histology, KRAS and BRAF mutations, wild-type p53, and microsatellite instability. Histone modifications that affect chromatin structures are also closely implicated in tumor suppressor gene inactivation and DNA methylation and histone modifications seem to form reinforcing networks for stable gene silencing. Much of the excitement in this field relates to the possibility of therapeutic reversal of epigenetic changes by chromatin-modifying drugs. In CpG island methylator phenotype-positive colorectal cancers, DNA methylation inhibitors restore key silenced pathways in vivo (eg, mismatch repair defects), and hypomethylation can largely abolish tumorigenesis in a mouse model. Drugs that inhibit DNA methylation and histone deacetylation are in use in the clinic and should be tested in colorectal malignancy.
Insights
Epigenetic changes, including DNA methylation, are key in colorectal cancer development. Targeting these epigenetic alterations with drugs may offer new therapeutic strategies for this malignancy.
Area of Science:
- Molecular Biology
- Cancer Research
- Epigenetics
Background:
- Epigenetic processes like DNA methylation and histone modifications regulate gene expression without altering DNA sequence.
- Neoplastic cells exhibit epigenetic alterations contributing to tumorigenesis.
- Colorectal cancer shows a distinct phenotype, the CpG island methylator phenotype (CIMP).
Purpose of the Study:
- To investigate the role of epigenetic changes in colorectal tumorigenesis.
- To understand the characteristics of CpG island methylator phenotype-positive colorectal cancers.
- To explore the therapeutic potential of reversing epigenetic alterations.
Main Methods:
- Analysis of epigenetic modifications in colorectal cancer.
- Characterization of CpG island methylator phenotype-positive colorectal cancers.
- In vivo and mouse model studies of epigenetic drug efficacy.
Main Results:
- CpG island methylator phenotype-positive colorectal cancers are associated with specific clinical and molecular features (female sex, older age, proximal location, mucinous histology, KRAS/BRAF mutations, wild-type p53, microsatellite instability).
- DNA methylation and histone modifications form reinforcing networks for gene silencing.
- DNA methylation inhibitors restored silenced pathways in vivo, and hypomethylation reduced tumorigenesis in a mouse model.
Conclusions:
- Epigenetic alterations play a critical role in colorectal cancer.
- Therapeutic reversal of epigenetic changes is a promising strategy.
- Drugs targeting DNA methylation and histone deacetylation warrant clinical testing in colorectal malignancy.
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