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Updated: Jul 15, 2026

Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Targeting aberrant chromatin structure in colorectal carcinomas
Kazuo Konishi1, Jean-Pierre J Issa
1Department of Leukemia, University of Texas, MD Anderson Cancer Center, Houston, TX 77030, USA.
Epigenetic changes, including DNA methylation, are key in colorectal cancer development. Targeting these epigenetic alterations with drugs may offer new therapeutic strategies for this malignancy.
Area of Science:
- Molecular Biology
- Cancer Research
- Epigenetics
Background:
- Epigenetic processes like DNA methylation and histone modifications regulate gene expression without altering DNA sequence.
- Neoplastic cells exhibit epigenetic alterations contributing to tumorigenesis.
- Colorectal cancer shows a distinct phenotype, the CpG island methylator phenotype (CIMP).
Purpose of the Study:
- To investigate the role of epigenetic changes in colorectal tumorigenesis.
- To understand the characteristics of CpG island methylator phenotype-positive colorectal cancers.
- To explore the therapeutic potential of reversing epigenetic alterations.
Main Methods:
- Analysis of epigenetic modifications in colorectal cancer.
- Characterization of CpG island methylator phenotype-positive colorectal cancers.
- In vivo and mouse model studies of epigenetic drug efficacy.
Main Results:
- CpG island methylator phenotype-positive colorectal cancers are associated with specific clinical and molecular features (female sex, older age, proximal location, mucinous histology, KRAS/BRAF mutations, wild-type p53, microsatellite instability).
- DNA methylation and histone modifications form reinforcing networks for gene silencing.
- DNA methylation inhibitors restored silenced pathways in vivo, and hypomethylation reduced tumorigenesis in a mouse model.
Conclusions:
- Epigenetic alterations play a critical role in colorectal cancer.
- Therapeutic reversal of epigenetic changes is a promising strategy.
- Drugs targeting DNA methylation and histone deacetylation warrant clinical testing in colorectal malignancy.
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