Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Accelerating medical research using the swift workflow system.

Tiberiu Stef-Praun1, Benjamin Clifford, Ian Foster

  • 1University of Chicago, IL 60615, USA.

Studies in Health Technology and Informatics
|May 4, 2007
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Author Correction: Temporal structure of natural language processing in the human brain corresponds to layered hierarchy of large language models.

Nature communications·2026
Same author

Can Evidential Pluralism mitigate bias and motivated reasoning?

Synthese·2026
Same author

A predictive processing framework for joint action and communication.

Physics of life reviews·2026
Same author

Beyond size and shape: Physicochemical properties of microplastic test materials generated by cryomilling.

Journal of hazardous materials·2026
Same author

Linguistic coupling between neural systems for speech production and comprehension during real-time dyadic conversations.

Neuron·2025
Same author

Sex-Specific Effects of Early-Life Unpredictability on Hippocampal and Amygdala Responses to Novelty in Adolescents.

Biological psychiatry global open science·2025
Same journal

The Essential Components and Critical Conditions for Success in a Learning Health System in Oncology.

Studies in health technology and informatics·2026
Same journal

Use of Artificial Intelligence in Screening for Adolescent Idiopathic Scoliosis: A Scoping Review.

Studies in health technology and informatics·2026
Same journal

Movement Related Biomechanics in Adolescent Idiopathic Scoliosis: A Review of Reviews.

Studies in health technology and informatics·2026
Same journal

The Impact of Surgical Correction of Adolescent Idiopathic Scoliosis Using Posterior Spinal Fusion on Selected Radiological Parameters and Respiratory Function.

Studies in health technology and informatics·2026
Same journal

Acute Effect of Physio-logic® Exercises on Muscle Tone and Stiffness in Adolescent Idiopathic Scoliosis Patients: A Preliminary Study.

Studies in health technology and informatics·2026
Same journal

Effects of Integrated Music and Occupational Therapy on Motor and Autonomic Function in Children with Neurogenic Scoliosis.

Studies in health technology and informatics·2026
See all related articles

The Swift system simplifies complex medical data analysis, enabling researchers to efficiently process large datasets like functional MRI scans. This computational tool enhances research speed and accessibility for medical professionals.

Area of Science:

  • Computational biology
  • Neuroscience
  • Medical informatics

Background:

  • Digitization in medicine generates vast datasets requiring significant computational power.
  • Medical researchers often lack the expertise for parallel or distributed computing needed for large-scale data analysis.
  • Functional MRI studies generate thousands of files, demanding complex, repeated processing.

Purpose of the Study:

  • To introduce the Swift system as a solution for efficient, large-scale data processing in medical research.
  • To demonstrate Swift's capability in handling computationally intensive workflows for medical applications.
  • To showcase Swift's application in analyzing functional MRI data for stroke recovery research.

Main Methods:

  • Development of SwiftScript, a high-level scripting language for specifying computational workflows.

Related Experiment Videos

  • Utilization of the Swift engine for efficient workflow execution on diverse computing infrastructures (sequential, parallel, distributed grids).
  • Implementation of the Swift provenance catalog for tracking computational actions and ensuring data integrity.

    • Main Results:

    • SwiftScript successfully encoded a complex application workflow for functional MRI data analysis.
    • Significant speedups were achieved by executing workflows on both local and distributed parallel computing clusters.
    • The Swift system demonstrated its effectiveness in managing large datasets and complex computations.

    Conclusions:

    • The Swift system provides an accessible and efficient platform for medical researchers to perform large-scale data analysis.
    • Swift facilitates the use of parallel and distributed computing, overcoming expertise barriers for medical professionals.
    • This system enhances the feasibility and speed of research in areas like brain imaging and stroke recovery.