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Mapping Absolute DNA Density in Cell Nuclei using Single-molecule Localization Microscopy
Published on: November 11, 2025
Nucleic acid and protein mass mapping by live-cell deep-ultraviolet microscopy
Benjamin J Zeskind1, Caroline D Jordan, Winston Timp
1WI-MIT BioImaging Center, 500 Technology Square NE47-287, Cambridge, Massachusetts 02142, USA. bzeskind@alum.mit.edu
Nature Methods
|June 5, 2007
Summary
A novel deep-ultraviolet microscope images cell dynamics and mass distribution in unlabeled cells with minimal toxicity. This technology maps nucleic acid and protein mass, advancing cell biology research.
Area of Science:
- Biophysics
- Cell Biology
- Microscopy
Background:
- Traditional microscopy techniques often require cell labeling, which can introduce artifacts or alter cellular behavior.
- Understanding cellular processes like mitosis and motility requires high-resolution imaging with minimal disruption.
Purpose of the Study:
- To develop and validate a deep-ultraviolet (UV) microscopy technique for imaging live cells.
- To assess the potential of deep-UV microscopy for mapping cellular mass and fluorescence in unlabeled cells.
- To evaluate the toxicity and temporal limits of deep-UV microscopy in cultured human and mouse cells.
Main Methods:
- Development of a deep-ultraviolet (UV) microscope operating at 280 nm.
- Imaging of cell mitosis and motility in cultured human and mouse cells.
- Application of computational methods to convert pixel intensity to mass estimates (nucleic acid, protein) and fluorescence yield.
Main Results:
- Successful imaging of cell mitosis and motility for 45 minutes with minimal UV-induced toxicity.
- Extended imaging up to 6 hours before significant cell death onset.
- Generation of detailed maps of nucleic acid mass, protein mass, and fluorescence yield in unlabeled cells.
Conclusions:
- Deep-UV microscopy offers a non-invasive method for studying dynamic cellular processes.
- The technique enables quantitative mapping of cellular components without labeling.
- This approach holds promise for advancing live-cell imaging and cell biology research.

