Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

NSAIDs trigger drug-specific response to exercise: a multi-omics systems biology analysis of a randomized crossover trial.

Skeletal muscle·2026
Same author

Dynamic responses in the human methylome to exertional heat exhaustion, heat injury, and heat stroke.

Human genomics·2026
Same author

Histopathology and Transcriptomics in Male Zebrafish Livers from a PFOS Multi-Generational Exposure Informs Adverse Outcome Pathway Development for Liver Steatosis.

Environmental toxicology and chemistry·2026
Same author

Transcriptomic Assessment of Host Responses in Vaccinia and Venezuelan Equine Encephalitis Virus-Infected Human Dendritic Cells.

Biomolecules·2026
Same author

Editorial: Differentiating and understanding the multifaceted nature of Traumatic Brain Injury using clinical and pre-clinical systems.

Frontiers in neurology·2026
Same author

Impact of dental implant restoration on biomechanical stress distribution in the temporomandibular joint among patients with posterior tooth loss.

Bioinformation·2026

Related Experiment Video

Updated: Jul 14, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

GeneCite: a stand-alone open source tool for high-throughput literature and pathway mining.

Rasha Hammamieh1, Nabarun Chakraborty, Yan Wang

  • 1Walter Reed Army Institute of Research, Molecular Pathology, Silver Spring, Maryland 20910, USA.

Omics : a Journal of Integrative Biology
|June 28, 2007
PubMed
Summary

GeneCite is a high-throughput data mining tool that efficiently extracts biological facts from multiple sources. It integrates results for faster interpretation of biological significance.

More Related Videos

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information
05:01

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information

Published on: July 1, 2020

Using Human Differentially Expressed Gene Lists to Perform Downstream Pathway Enrichment Analysis and Target Prioritization
03:08

Using Human Differentially Expressed Gene Lists to Perform Downstream Pathway Enrichment Analysis and Target Prioritization

Published on: October 3, 2025

Related Experiment Videos

Last Updated: Jul 14, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information
05:01

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information

Published on: July 1, 2020

Using Human Differentially Expressed Gene Lists to Perform Downstream Pathway Enrichment Analysis and Target Prioritization
03:08

Using Human Differentially Expressed Gene Lists to Perform Downstream Pathway Enrichment Analysis and Target Prioritization

Published on: October 3, 2025

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Data Mining

Background:

  • Systematic extraction of biological facts from scientific literature is crucial but challenging.
  • Efficiency and precision in information retrieval are key for scientific discovery.
  • Current tools often lack integration across diverse knowledge sources.

Purpose of the Study:

  • To develop a high-throughput data mining tool, GeneCite, for efficient biological fact extraction.
  • To integrate information retrieval from multiple databases and archives.
  • To provide a user-friendly platform for managing and interpreting biological data.

Main Methods:

  • GeneCite is a stand-alone, Java-based tool.
  • It performs high-throughput searches across PubMed and UniSTS databases.
  • It mines an integrated archive of biological pathways and offers a data management system.

Main Results:

  • GeneCite enables simultaneous searching of multiple biological knowledge sources.
  • It provides integrated results in a spreadsheet format with hyperlinks to original sources.
  • The tool facilitates time-efficient integration and interpretation of biological significance.

Conclusions:

  • GeneCite offers an efficient solution for biological data mining and information retrieval.
  • The tool enhances the integration and interpretation of scientific knowledge.
  • It supports researchers by providing a comprehensive and accessible data mining platform.