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Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR (RS-PCR)
Published on: November 4, 2016
Reclassification of phenotypically identified staphylococcus intermedius strains
Takashi Sasaki1, Ken Kikuchi, Yoshikazu Tanaka
1Department of Infection Control Science, Faculty of Medicine, Juntendo University, 2-1-1 Hongo, Bunkyo-ku, Tokyo 113-8421, Japan.
Abstract:
To reclassify phenotypically identified Staphylococcus intermedius strains, which might include true S. intermedius strains and novel species such as Staphylococcus pseudintermedius and Staphylococcus delphini, we analyzed molecular phylogenies and phenotypic characteristics of 117 S. intermedius group (SIG) strains tentatively identified as being S. intermedius by the Rapid ID32 Staph assay. From phylogenetic analyses of sodA and hsp60 sequences, the SIG strains were divided into three clusters, which belonged to S. pseudintermedius LMG 22219(T), S. intermedius ATCC 29663(T), and S. delphini LMG 22190(T). All the SIG strains from dogs, cats, and humans were identified as being S. pseudintermedius. The wild pigeon strains, except one, were identified as being S. intermedius, and strains from all domestic pigeons, one wild pigeon, horses, and a mink were identified as being S. delphini. In addition, a phylogenetic analysis of nuc genes revealed that S. delphini strains were divided into two clusters: one was the cluster (S. delphini group A) that belonged to S. delphini LMG 22190(T), and the other was the cluster (S. delphini group B) that was more related to S. pseudintermedius LMG 22219(T) than S. delphini LMG 22190(T). The DNA-DNA hybridization results showed that S. delphini group B strains were distinguished from S. delphini group A, S. intermedius, and S. pseudintermedius strains. S. intermedius is distinguishable from S. pseudintermedius or S. delphini by positive arginine dihydrolase and acid production from beta-gentiobiose and d-mannitol. However, phenotypical characteristics to differentiate S. delphini group A, S. delphini group B, and S. pseudintermedius were not found. In conclusion, SIG strains were reclassified into four clusters with three established and one probably novel species.
Insights
This study reclassifies Staphylococcus intermedius group (SIG) strains using molecular and phenotypic analyses. Findings reveal distinct clusters corresponding to Staphylococcus pseudintermedius, Staphylococcus intermedius, and Staphylococcus delphini, with evidence for a potentially novel species.
Area of Science:
- Microbiology
- Bacterial Taxonomy
- Molecular Phylogenetics
Background:
- The Staphylococcus intermedius group (SIG) includes species phenotypically similar but genetically distinct.
- Accurate classification is crucial for understanding host-pathogen relationships and disease transmission.
Purpose of the Study:
- To reclassify phenotypically identified SIG strains using molecular and phenotypic data.
- To differentiate between true Staphylococcus intermedius and closely related species like Staphylococcus pseudintermedius and Staphylococcus delphini.
Main Methods:
- Phylogenetic analysis of sodA, hsp60, and nuc gene sequences.
- Phenotypic characterization including biochemical tests (arginine dihydrolase, acid production).
- DNA-DNA hybridization for strain differentiation.
Main Results:
- Phylogenetic analysis divided SIG strains into three main clusters: S. pseudintermedius, S. intermedius, and S. delphini.
- Strains from common hosts (dogs, cats, humans) were identified as S. pseudintermedius.
- S. delphini strains showed further subdivision (Group A and Group B), with Group B genetically closer to S. pseudintermedius.
- Biochemical tests could distinguish S. intermedius from S. pseudintermedius/S. delphini, but not between S. delphini groups and S. pseudintermedius.
Conclusions:
- SIG strains were reclassified into four distinct clusters, representing three established species and one probable novel species.
- S. pseudintermedius is prevalent in domestic animals and humans.
- Further investigation is needed to fully characterize the novel S. delphini group B and its taxonomic status.
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