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Updated: Jul 14, 2026

Probiotic Studies in Neonatal Mice Using Gavage
Published on: January 27, 2019
Perinatal and neonatal manipulation of the intestinal microbiome: a note of caution
1Department of Pediatrics, University of Florida, Gainesville, Florida 32610, USA. neuj@peds.ufl.edu
Insights
The early gut microbiome is crucial for infant health and lifelong gene expression. Manipulating the infant gut microbiome offers benefits but requires caution during the neonatal period.
Area of Science:
- Microbiology
- Gastroenterology
- Developmental Biology
Background:
- The intestinal microbiome's establishment post-birth is vital for early health and disease origins.
- Factors like nutrition, delivery mode, and antibiotics significantly influence gut microbial ecology.
- Neonatal gut microbial development has amplified, long-lasting effects compared to later interventions.
Purpose of the Study:
- To review recent findings on the benefits of early gastrointestinal (GI) microbiome manipulation.
- To provide a cautionary perspective on indiscriminate GI microbiome interventions during perinatal and neonatal periods.
Main Methods:
- Review of recent scientific literature on gut microbiome development.
- Analysis of factors influencing neonatal microbial ecology.
- Evaluation of the long-term consequences of early microbiome modulation.
Main Results:
- Early gut microbiome establishment critically impacts health and gene expression.
- Specific factors can significantly alter the developing microbial community.
- Neonatal interventions have more profound long-term effects than later ones.
Conclusions:
- Early manipulation of the GI microbiome can confer health benefits.
- Indiscriminate interventions during the neonatal period warrant caution due to amplified long-term effects.
Abstract:
As we learn more about interactions between microbes and the developing gastrointestinal (GI) tract, it is becoming clear that the establishment of the intestinal "microbiome" shortly after birth plays a critical role in the early origins of health and disease. Nutrition, mode of delivery, the use of maternal or postnatal antibiotics, and pre- and probiotics are factors that may alter the microbial ecology and affect lifelong gene expression. Because the neonatal period is a critical period of development when microbes become established in the GI tract, the long-term effects of manipulations of the GI microbial ecology during this time are more amplified than the effects of later manipulations. In this paper, recent research findings are reviewed with the intent of providing information about the benefits of early manipulation of the GI microbiome, but also to give a warning about its indiscriminant manipulation during the perinatal and neonatal time periods.
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