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Updated: Jul 13, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Base excision repair modulation as a risk factor for human cancers
1Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland. tudek@ibb.waw.pl
Abstract:
Oxidative DNA damage and DNA repair mediate the development of several human pathologies, including cancer. The major pathway for oxidative DNA damage repair is base excision repair (BER). Functional assays performed in blood leukocytes of cancer patients and matched controls show that specific BER pathways are decreased in cancer patients, and may be risk factors. These include 8-oxoguanine (8-oxoG) repair in lung and head and neck cancer patients and repair of lipid peroxidation (LPO) induced 1,N(6)-ethenoadenine (epsilonA) in lung cancer patients. Decrease of excision of LPO-induced DNA damage, epsilonA and 3,N(4)-ethenocytosine (epsilonC) was observed in blood leukocytes of patients developing lung adenocarcinoma, specific histological type of cancer related to inflammation and healing of scars. BER proteins activity depends on gene polymorphism, interactions between BER system partners and post-translational modifications. Polymorphisms of DNA glycosylases may change their enzymatic activities, and some polymorphisms increase the risk of inflammation-related cancers, colorectal, lung and other types. Polymorphisms of BER platform protein, XRCC1 are connected with increased risk of tobacco-related cancers. BER efficiency may also be changed by reactive oxygen species and some diet components, which induce transcription of several glycosylases as well as a major human AP-endonuclease, APE1. BER is also changed in tumors in comparison to unaffected surrounding tissues, and this change may be due to transcription stimulation, post-translational modification of BER enzymes as well as protein-protein interactions. Modulation of BER enzymes activities may be, then, an important factor determining the risk of cancer and also may participate in cancer development.
Insights
DNA repair pathways are crucial for preventing cancer. Specific base excision repair (BER) pathways are reduced in cancer patients, indicating a potential role in cancer development and risk.
Area of Science:
- Molecular Biology
- Genetics
- Oncology
Background:
- Oxidative DNA damage and its repair are implicated in human diseases, particularly cancer.
- Base excision repair (BER) is the primary pathway for repairing oxidative DNA damage.
- Deficiencies in specific BER pathways are observed in cancer patients and may represent risk factors.
Purpose of the Study:
- To investigate the role of specific base excision repair (BER) pathways in cancer development.
- To identify potential biomarkers for cancer risk based on BER pathway function.
Main Methods:
- Functional assays in blood leukocytes of cancer patients and controls.
- Analysis of DNA damage repair, including 8-oxoguanine (8-oxoG) and ethenoadenine (epsilonA) repair.
- Examination of the influence of gene polymorphisms, protein interactions, and post-translational modifications on BER activity.
Main Results:
- Decreased activity of specific BER pathways, such as 8-oxoG repair and epsilonA repair, was observed in cancer patients.
- Reduced excision of lipid peroxidation-induced DNA damage (epsilonA and epsilonC) was noted in individuals developing lung adenocarcinoma.
- BER protein activity is influenced by gene polymorphisms, interactions, and modifications, affecting cancer risk.
Conclusions:
- Impaired BER pathways, particularly in response to oxidative and lipid peroxidation damage, are associated with increased cancer risk.
- Gene polymorphisms in BER components can modulate cancer risk, especially for inflammation- and tobacco-related cancers.
- Modulating BER enzyme activity presents a potential strategy for cancer prevention and treatment.
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