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Updated: Jul 13, 2026

Assaying for Inorganic Polyphosphate in Bacteria
Published on: January 21, 2019
Polyphosphate kinase is involved in stress-induced mprAB-sigE-rel signalling in mycobacteria
Kamakshi Sureka1, Supratim Dey, Pratik Datta
1Department of Chemistry, Bose Institute, 93/1 Acharya Prafulla Chandra Road, Calcutta 700009, India.
Abstract:
Polyphosphate kinase 1 (PPK1) helps bacteria to survive under stress. The ppk1 gene of Mycobacterium tuberculosis was overexpressed in Escherichia coli and characterized. Residues R230 and F176, predicted to be present in the head domain of PPK1, were identified as residues critical for polyphosphate (polyP)-synthesizing ability and dimerization of PPK1. A ppk1 knockout mutant of Mycobacterium smegmatis was compromised in its ability to survive under long-term hypoxia. The transcription of the rel gene and the synthesis of the stringent response regulator ppGpp were impaired in the mutant and restored after complementation with ppk1 of M. tuberculosis, providing evidence that PPK1 is required for the stringent response. We present evidence that PPK1 is likely required for mprAB-sigE-rel signalling. sigma(E) regulates the transcription of rel, and we hypothesize that under conditions of stress polyP acts as a preferred donor for MprB-mediated phosphorylation of MprA facilitating transcription of the sigE gene thereby leading finally to the enhancement of the transcription of rel in M. smegmatis and M. tuberculosis. Downregulation of ppk1 led to impaired survival of M. tuberculosis in macrophages. PolyP plays a central role in the stress response of mycobacteria.
Insights
Polyphosphate kinase 1 (PPK1) is crucial for bacterial stress survival. This study shows PPK1 enables polyphosphate synthesis and is vital for the stringent response in mycobacteria, enhancing survival in harsh conditions.
Area of Science:
- Microbiology
- Molecular Biology
- Biochemistry
Background:
- Polyphosphate kinase 1 (PPK1) is essential for bacterial stress adaptation.
- The role of PPK1 in mycobacteria, particularly in stress response pathways, requires further elucidation.
Purpose of the Study:
- To characterize the function of PPK1 from Mycobacterium tuberculosis.
- To investigate the role of PPK1 in the stringent response and stress survival of mycobacteria.
Main Methods:
- Overexpression and characterization of Mycobacterium tuberculosis ppk1 in Escherichia coli.
- Construction and analysis of a ppk1 knockout mutant in Mycobacterium smegmatis.
- Investigation of gene transcription and regulator synthesis under various conditions.
Main Results:
- Specific residues (R230, F176) critical for PPK1's polyphosphate synthesis and dimerization were identified.
- A ppk1 knockout mutant showed impaired survival under hypoxia and defective stringent response (rel gene transcription, ppGpp synthesis).
- PPK1 is essential for the mprAB-sigE-rel signaling pathway and survival of M. tuberculosis within macrophages.
Conclusions:
- PPK1 is indispensable for polyphosphate synthesis, dimerization, and the stringent response in mycobacteria.
- PPK1 plays a central role in mediating the mprAB-sigE-rel signaling cascade crucial for stress adaptation.
- Polyphosphate, synthesized by PPK1, is a key molecule for mycobacterial survival under various stress conditions, including macrophage infection.
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