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Updated: Jul 13, 2026

Genotyping Single Nucleotide Polymorphisms in the Mitochondrial Genome by Pyrosequencing
Published on: February 10, 2023
Rare and fleeting: an example of interspecific recombination in animal mitochondrial DNA
Kate L Ciborowski1, Sofía Consuegra, Carlos García de Leániz
1Institute of Zoology, Regent's Park, London NW1 4RY, UK.
Abstract:
Recombination is thought to occur only rarely in animal mitochondrial DNA (mtDNA). However, detection of mtDNA recombination requires that cells become heteroplasmic through mutation, intramolecular recombination or 'leakage' of paternal mtDNA. Interspecific hybridization increases the probability of detecting mtDNA recombinants due to higher levels of sequence divergence and potentially higher levels of paternal leakage. During a study of historical variation in Atlantic salmon (Salmo salar) mtDNA, an individual with a recombinant haplotype containing sequence from both Atlantic salmon and brown trout (Salmo trutta) was detected. The individual was not an F1 hybrid but it did have an unusual nuclear genotype which suggested that it was a later-generation backcross. No other similar recombinant haplotype was found from the same population or three neighbouring Atlantic salmon populations in 717 individuals collected during 1948-2002. Interspecific recombination may increase mtDNA variability within species and can have implications for phylogenetic studies.
Insights
Mitochondrial DNA (mtDNA) recombination, rarely observed in animals, was detected in Atlantic salmon. This rare interspecific recombination event between Atlantic salmon and brown trout suggests a potential source of genetic variability.
Area of Science:
- Evolutionary Biology
- Genetics
- Zoology
Background:
- Animal mitochondrial DNA (mtDNA) recombination is considered a rare evolutionary event.
- Detecting mtDNA recombination necessitates cellular heteroplasmy, arising from mutation, intramolecular recombination, or paternal mtDNA leakage.
- Interspecific hybridization elevates the likelihood of detecting mtDNA recombinants due to increased sequence divergence and paternal leakage.
Purpose of the Study:
- To investigate historical variation in Atlantic salmon (Salmo salar) mitochondrial DNA (mtDNA).
- To detect and characterize instances of mtDNA recombination within salmonid populations.
Main Methods:
- Analysis of historical variation in Atlantic salmon mtDNA.
- Detection of recombinant haplotypes using sequence analysis.
- Genotyping to determine nuclear genotype and assess hybridization status.
Main Results:
- An individual Atlantic salmon exhibited a recombinant mtDNA haplotype, incorporating sequences from both Atlantic salmon and brown trout (Salmo trutta).
- The individual was identified as a later-generation backcross, not an F1 hybrid, indicated by its nuclear genotype.
- No other similar recombinant haplotypes were found in 717 individuals from the same and three neighboring Atlantic salmon populations sampled between 1948-2002.
Conclusions:
- Interspecific recombination in salmonids, though rare, can occur and contribute to mtDNA variability within species.
- The detection of such recombination has significant implications for phylogenetic studies relying on mtDNA markers.
- Further research is warranted to understand the frequency and mechanisms of interspecific mtDNA recombination in natural populations.
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